RNA id: XR_004577392.1


Basic Information

Item Value
RNA id XR_004577392.1
length 529
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC117596225
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15723845 ~ 15731883 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGTCGATTCACACAGTCTCAACAGTATTAATCACAATAACCATTATAATCAAAAatgaaaggggaaaaataaagaaaaataaataaataaacccaatGTCAATGAAATGCTCTGGTTATACTCGGATTTCACCTCAGTATTACCCAGCTGGGATTTGAAGTACACCGTTGGCGCGCTAGTTGGAGCTCTTTCGATGGGAAAAACTGTACTCACGAATCCGGGAGAACTAGATTTCACTTGCGGAATAATAATCGTTGACCCTCAATGCACGATGAGCTGAAAAGCACGGCCTCCGTGACGCCTCCCGTCTGGAACAGGTGTAGTATGCATCTGCTGTTGCCTACTGGATGTAGTGTCCTAATAGTCCAATAAAAAAGGCAATGGACGAAAGATGTACAACTCGGGCTGGAACCAACAAACAACTACTTACAACGCATTCATTATATCTTGATAACGAAGGCTTTCAGGAAACACCTGCAAAACTGGCAAGTACATAAGGCACTCCCTTCTTTAAATTGTTCATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459313 lncRNA upstream 333010 15390619 ~ 15390835 (+) True G387513
TU459304 lncRNA upstream 353072 15370562 ~ 15370773 (+) True G387504
TU459288 lncRNA upstream 362828 15354550 ~ 15361017 (+) False zgc:193711
TU459165 lncRNA upstream 449766 15261641 ~ 15274079 (+) False sik2a
TU459163 lncRNA upstream 453936 15266107 ~ 15269909 (+) True G387388
TU459481 lncRNA downstream 39161 15771044 ~ 15771244 (+) True G387659
TU459498 lncRNA downstream 65711 15797594 ~ 15803923 (+) True G387675
TU459501 lncRNA downstream 75666 15807549 ~ 15811660 (+) False LOC113531170
TU459537 lncRNA downstream 207047 15938930 ~ 15941061 (+) True G387704
TU459553 lncRNA downstream 210203 15942086 ~ 15987042 (+) False G387707
XM_034300732.1 mRNA upstream 238087 15470442 ~ 15485758 (+) True aatf
XM_034300527.1 mRNA upstream 254256 15443513 ~ 15469589 (+) False lhx1b
XM_034300526.1 mRNA upstream 254256 15460940 ~ 15469589 (+) True lhx1b
XM_026921549.2 mRNA upstream 313564 15405839 ~ 15410281 (+) True mrm1
XM_026922029.2 mRNA upstream 344595 15376648 ~ 15379250 (+) True fzd9a
XM_034300555.1 mRNA downstream 17487 15749370 ~ 15754438 (+) True LOC117596224
XM_034300556.1 mRNA downstream 17487 15749370 ~ 15754438 (+) False LOC117596224
XM_034300557.1 mRNA downstream 17487 15749370 ~ 15754438 (+) False LOC117596224
XM_026921811.2 mRNA downstream 65971 15797854 ~ 15802576 (+) True znhit1
XM_034300703.1 mRNA downstream 76129 15808012 ~ 15859905 (+) False LOC113531170
XR_004577401.1 other upstream 356598 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 1895697 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 1899790 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 4412992 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 5344180 10378213 ~ 10379665 (+) True G384593
TU459555 other downstream 302940 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 416477 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 814258 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 923786 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 1543616 17275499 ~ 17276968 (+) True LOC117596262

Expression Profile