RNA id: XR_004577398.1


Basic Information

Item Value
RNA id XR_004577398.1
length 829
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117596228
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7154594 ~ 7157229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttggggtcagagcacagggtcagccatgatacagcacccctggagaagagagagttaagggccttgttcaAGGGCTCATAAATGGCAGCTTAAcgcagagccttaaccactgagccaccactaccCTTGTAATTGTAAAATCAGCAAGGCACTACAAATGTCAGCGCAGCAGATGCTCCCTGTGATCCTGCCTCATTCACACACCTGAGAGTCAAACACATGGCTCACCGTCCAGGTCCAGATGttgaaaagcatttcactGGCCAGCCGCTTGGAATGAGGTGAATGGTGTATGTGGTGGTAACAGGCAACACAGTGACCAAGTAAACTAAGAAGGAGTCCAGTCTCACCACATTCAAATTCACTGGCTATGACAAGATCTTTACCAGCATGGTGAAGAATAACGGGCAAACTGCACCTTTCTATACACTTCATGTACTTTAGTGTGATAAGAGTGGAAATGGCAAACATATGGAAAGCAAGTGTTCTctcctgtgattgacaggtgtgtAGGAAGGCCAGTCCAGGAAGTGACTGCAGCGCCTTCAGTAAAGGTAGTTGATGTCGTGAAAATTAAGCATAGTAtgcaaagtttccagagaaacaggacgtTTAATCAGCAGTCCTCCATCAGCTGTGTGAGCAAAGTGCTTGCAGGGATTTTATGGCATTGCACTTTTTTAGGGCACATACAGCTGCCTAGGAGTCTAAAATGTGTCCTCATAACATTCAGTAAGGGAGCTGTGTCTTGTGGTAGTACATGACATCAGCAGAATGCCTTGTAAACCAGCTGGCCGCTGGGCACCAAGGCGTTTTTCTCAGGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453632 lncRNA upstream 44885 7108726 ~ 7109709 (+) True G382606
TU453390 lncRNA upstream 86833 7066813 ~ 7067761 (+) True G382380
TU453360 lncRNA upstream 199666 6951719 ~ 6954928 (+) True G382351
XR_004577428.1 lncRNA upstream 339219 6811118 ~ 6815375 (+) True LOC117596241
TU453300 lncRNA upstream 344027 6810353 ~ 6810567 (+) True G382292
TU453653 lncRNA downstream 103024 7260253 ~ 7261090 (+) True LOC113531088
TU453677 lncRNA downstream 229281 7386510 ~ 7388236 (+) True G382646
TU453699 lncRNA downstream 291682 7448911 ~ 7450445 (+) True G382667
TU453724 lncRNA downstream 340537 7497766 ~ 7500585 (+) True G382686
TU453732 lncRNA downstream 381185 7538414 ~ 7544086 (+) False dpm2
XM_034300569.1 mRNA upstream 4828 7080107 ~ 7149766 (+) False mtmr4
XM_034300570.1 mRNA upstream 4828 7087758 ~ 7149766 (+) False mtmr4
XM_034300568.1 mRNA upstream 4828 7090116 ~ 7149766 (+) False mtmr4
XM_026921459.2 mRNA upstream 4828 7100242 ~ 7149766 (+) True mtmr4
XM_034300567.1 mRNA upstream 4828 7113976 ~ 7149766 (+) False mtmr4
XM_034300572.1 mRNA downstream 6070 7163299 ~ 7179897 (+) False ca4a
XM_026921688.2 mRNA downstream 6072 7163301 ~ 7179897 (+) True ca4a
XM_034300571.1 mRNA downstream 67481 7224710 ~ 7238694 (+) True gusb
XM_034300495.1 mRNA downstream 103026 7260255 ~ 7260867 (+) False LOC113531088
XM_026922341.2 mRNA downstream 118325 7275554 ~ 7279408 (+) True rplp0
XR_004577432.1 other upstream 96395 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 770934 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 911897 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 973681 6177804 ~ 6180913 (+) True G381835
XR_003403255.2 other upstream 1102697 5990023 ~ 6051897 (+) False zmp:0000001168
XR_003403276.1 other downstream 119616 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 120370 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 985382 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1025162 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1433138 8590367 ~ 8591155 (+) False gig2o

Expression Profile