Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577415.1 |
| length | 912 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC117596237 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 14152144 ~ 14184051 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU458138 | lncRNA | upstream | 21517 | 14130171 ~ 14130627 (+) | True | G386490 |
| TU458097 | lncRNA | upstream | 76084 | 14073248 ~ 14076060 (+) | True | G386458 |
| TU458124 | lncRNA | upstream | 93641 | 14058228 ~ 14058503 (+) | True | G386476 |
| TU458110 | lncRNA | upstream | 114222 | 14037683 ~ 14037922 (+) | True | G386462 |
| TU458096 | lncRNA | upstream | 118903 | 14032835 ~ 14033241 (+) | True | G386457 |
| TU458889 | lncRNA | downstream | 524805 | 14708856 ~ 14716055 (+) | True | G387160 |
| TU458926 | lncRNA | downstream | 650868 | 14834919 ~ 14924865 (+) | True | G387196 |
| TU458927 | lncRNA | downstream | 672217 | 14856268 ~ 14868701 (+) | True | G387197 |
| TU458941 | lncRNA | downstream | 750653 | 14934704 ~ 14936042 (+) | True | G387208 |
| TU459148 | lncRNA | downstream | 979333 | 15163384 ~ 15233645 (+) | False | c27h11orf88 |
| XM_026921694.2 | mRNA | upstream | 58789 | 14086642 ~ 14093355 (+) | True | rad51d |
| XM_026922387.2 | mRNA | upstream | 262877 | 13876835 ~ 13889267 (+) | True | rcc1l |
| XM_034300462.1 | mRNA | upstream | 277235 | 13870651 ~ 13874909 (+) | False | ncf1 |
| XM_034300461.1 | mRNA | upstream | 277237 | 13870651 ~ 13874907 (+) | True | ncf1 |
| XM_026922444.2 | mRNA | upstream | 341590 | 13807507 ~ 13810554 (+) | False | pex12 |
| XM_026921486.2 | mRNA | downstream | 564387 | 14748438 ~ 14756063 (+) | True | nup88 |
| XM_026921634.2 | mRNA | downstream | 608082 | 14792133 ~ 14795940 (+) | True | mis12 |
| XM_026921630.2 | mRNA | downstream | 627051 | 14811102 ~ 14855941 (+) | False | mcama |
| XM_026921632.2 | mRNA | downstream | 627053 | 14811104 ~ 14855941 (+) | True | mcama |
| XM_026921631.2 | mRNA | downstream | 627057 | 14811108 ~ 14855941 (+) | False | mcama |
| TU457943 | other | upstream | 323996 | 13825850 ~ 13828148 (+) | True | G386325 |
| TU457909 | other | upstream | 328089 | 13821788 ~ 13824055 (+) | True | G386294 |
| XR_003403209.2 | other | upstream | 2841291 | 11297980 ~ 11310853 (+) | False | ajm1 |
| TU455978 | other | upstream | 3772479 | 10378213 ~ 10379665 (+) | True | G384593 |
| TU455483 | other | upstream | 4384108 | 9765740 ~ 9768036 (+) | True | G384178 |
| XR_004577401.1 | other | downstream | 1177307 | 15361358 ~ 15367247 (+) | True | fkbp6 |
| TU459555 | other | downstream | 1850772 | 16034823 ~ 16038605 (+) | True | LOC113531248 |
| trnam-cau_49 | other | downstream | 1964309 | 16148360 ~ 16148432 (+) | True | trnam-cau_49 |
| TU460079 | other | downstream | 2362090 | 16546141 ~ 16555532 (+) | False | cdc42ep2 |
| TU460111 | other | downstream | 2471618 | 16655669 ~ 16657113 (+) | True | LOC113531241 |
