RNA id: XR_004577416.1


Basic Information

Item Value
RNA id XR_004577416.1
length 1872
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC117596237
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14152144 ~ 14184051 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCATTTGAATGTCAGAATCAGGTGTTTATAATGAGGGCTGTAATAAAACTTCTCATTtcaaatgcaaaatacaaaaacaaatggcAGTTTTTCCTCAGACACATTTCTCATATCTGATTGAGGACtcctgaaacaaacaaacaaacaaaacaggaagactgtttttcacaaaagaaagggaaaaaagagaggctggttaaACACAAGAACAAGTTTTGCCACTTTCCTGTGCATCATAACTTCCTTTTGCGAGTTTGATTGCCCTGCAATGTTCTTTTTCCTAATTGATTTacctttgcttgtttttttgttgttcctgtTGATGATGATTTTGTctgttgaattgaatttgagTAAAAGGCTCAGTCTTACATCCTACTGCTTGACATacaggaaaatgaaatgaactttggggtagtaacagtagctccactttcttctccttcttccaTGTTGCACCATTCTCTGCAATTCGTGATGTCTACCTAACTACAGTTTGATTCACTGGCTCCAGAAAATGTTGTTTGGACACTATTCTACCTCCAGATCCATGCTGAGAGAAATGTATCCAATGATGAATAAAAGGAAGACGCTCTATCAACTTTCGCTGtggcCAATAATCCAAACACGGTGAATCAGAGCATTGCCTGAGATTGCAGCACACATATTATTATGGTTCCCTCTTGTACACCCAGCACAttcactgtggctgaatgacCTGTGATGTTGCTCACTAGCTCACGTTGGccatccttttttccccccagcttTAAGCAGCAGTTTATTAAAAGAAGGTTTATTAAATTTAGTAAATCATGGCAGTCTCCCAGTTCACTTTGCATGGTAAATGAACATTCCAAATTAATTCTGTGATCGTAAGAACTGGTAATGTAGAATGTTCCAGCTTTGAGAATTCTACCTCCTACTTCAGTGTTCATGTAATCTCAACTGTTTAagcatatttatttgtaatttgtggACTGCTATATCTAAACTTACCATTGCATTTAAAGATGTTTAGAGCATGGGGTATAGGAAATAGCATTTAATGTAATGGCTCCTCCCTTCACATGATGGTTCACATTTTGTCCTGTTATTGATTCGTTAccctattgtgttcacctgttatGTGTTTTTAGATCTGATCAGTTTGTCTACTTGCACCCCATCTTCTTGTGAAGTCTTACCATACATTTTTGTCATAAGTTCAAGCCTTGGTTTCCATGTTTCTAAGCATTTTCTAGTTTCCCATGAATTATGATTCTTTGATTGATTTGCCCTAGTAAACCACACACTGGGCAGTATTCAGAGTTTGTGACAAGTCCAAACACTGCACcaatatttgtgtaaatttgcacTTATTCATGCTTTGACTATGCACCTGGTTAAGTGAAATTTCTgggctttttattcattttatgcaaattatctgCAGGTACAGTAGTTCAGgcctccaaggttgccagatgttttttttcttgatggGGAAAACGAACAAACTGTAACGTGgggtttgggttttgtttgtgtttcttgttcATTGATCTCATGTCTTTTATTCTGGTGTTTAGTCATGGTTCCTGTCTAGGCATGTGCTCCTTGCCCCTCCTGtgatcttgtcatgttaccctTGTCTTTGTGTCACATTTTGATTGGTTCCTTGGTTATATGTgtcttgttctgattggttgatttaaGTCATGTGTCCTTGATTgtttggtgtgtatatatagccCTCATGTAGCCATTGTCTCTTGTCGTGTATTGATGTAGTAACCTGATCAAGTCTGTCCAAGCCAAGTTAAGtaaagtctttatttgtatctTGGTAttcactttgttaaataaagctgTACTTGGGTTCATCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458138 lncRNA upstream 21517 14130171 ~ 14130627 (+) True G386490
TU458097 lncRNA upstream 76084 14073248 ~ 14076060 (+) True G386458
TU458124 lncRNA upstream 93641 14058228 ~ 14058503 (+) True G386476
TU458110 lncRNA upstream 114222 14037683 ~ 14037922 (+) True G386462
TU458096 lncRNA upstream 118903 14032835 ~ 14033241 (+) True G386457
TU458144 lncRNA downstream 15916 14170058 ~ 14175425 (+) True G386495
TU458889 lncRNA downstream 554714 14708856 ~ 14716055 (+) True G387160
TU458926 lncRNA downstream 680777 14834919 ~ 14924865 (+) True G387196
TU458927 lncRNA downstream 702126 14856268 ~ 14868701 (+) True G387197
TU458941 lncRNA downstream 780562 14934704 ~ 14936042 (+) True G387208
XM_026921694.2 mRNA upstream 58789 14086642 ~ 14093355 (+) True rad51d
XM_026922387.2 mRNA upstream 262877 13876835 ~ 13889267 (+) True rcc1l
XM_034300462.1 mRNA upstream 277235 13870651 ~ 13874909 (+) False ncf1
XM_034300461.1 mRNA upstream 277237 13870651 ~ 13874907 (+) True ncf1
XM_026922444.2 mRNA upstream 341590 13807507 ~ 13810554 (+) False pex12
XM_026921486.2 mRNA downstream 594296 14748438 ~ 14756063 (+) True nup88
XM_026921634.2 mRNA downstream 637991 14792133 ~ 14795940 (+) True mis12
XM_026921630.2 mRNA downstream 656960 14811102 ~ 14855941 (+) False mcama
XM_026921632.2 mRNA downstream 656962 14811104 ~ 14855941 (+) True mcama
XM_026921631.2 mRNA downstream 656966 14811108 ~ 14855941 (+) False mcama
TU457943 other upstream 323996 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 328089 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 2841291 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 3772479 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 4384108 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 1207216 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 1880681 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 1994218 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 2391999 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 2501527 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile