RNA id: XR_004577443.1


Basic Information

Item Value
RNA id XR_004577443.1
length 916
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC117596264
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11126383 ~ 11127885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTTGGCAAAATGGAAGAAGATGGTTCCTCGGCACAGTGTGAGCAACCATGGCCATACTTAAAAAGTATGTTCCAGTTTTCTGAAAAGGTCAAAGATTCTTTTCGTTTaaaatgtttgctttgtttgccTAAACAAATCACAGCCTTCAAAAACTCGCCGTCCAACCTGCGAAAGCATATTGAGGTACAGTCCAGCTGAAATGGCCTTTTGGGGGGGAATATACTACCACCATGAGTCTAGTTGTGAAGGCGACAAACATATTACAAGGAGATTCCAACATTCAGACTACTATTACTATCCTCATCACCAAGCTTGAGAAAACAAGAGCATCGCTGAGACTCTGCAAGCCGCTAGTTGATGCCCTCCTAGATGGTTTGAAAAAACGGTTTGGGAACATGATGTCTGATCCCGAGCTAGTTGCTGCAGCCATTATTCATCCAGAGTTCAATACATCCTCAAACTTGGCCTCACTTACATCAAGGAACATCTTTCTGATCATGATGAGTCTTCAACTCCTCAAGCACTTCTGATGAAGAGGATTTCTTCTCTAATATCAAGCATACATGCACACAGGAAACATCCTAACAACTGGATGTATACCTACCATGTATAGCTGAAGGTTTGACTATGTTGACATCTTATCCAGCCTTATCCATCCTGTCGCTCAAGCTGACCACAGCCCTGCCTGTGAAAGGCTTTTTAGTGCAGCTGGATTGATTGCAGCCCAAAAAGGGAAGCAATTAATTCACATAACTTTGAGAACCAGCTTCTACTTAAGATGAATAAGAACTATAAGTTTTTATAAGTTTGACTGATTCGACCTAAGATTTCTCCCGACTAGTGGCCTGTGAGAGACAGTATCGTCGTTGTCACATCAAATTGTTtgaagtttttgttttgatgtcaGATAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456400 lncRNA upstream 9801 11116378 ~ 11116582 (+) True G384973
TU456323 lncRNA upstream 28448 11096842 ~ 11097935 (+) True G384906
TU456303 lncRNA upstream 188982 10922884 ~ 10937401 (+) True G384887
TU456279 lncRNA upstream 341449 10784701 ~ 10784934 (+) True G384868
TU456278 lncRNA upstream 342584 10783404 ~ 10783799 (+) True G384867
XR_003403219.2 lncRNA downstream 2991 11130876 ~ 11131867 (+) True LOC113531091
TU456405 lncRNA downstream 16858 11144743 ~ 11145027 (+) True G384977
TU456419 lncRNA downstream 157441 11285326 ~ 11285765 (+) True G384989
TU456412 lncRNA downstream 170089 11297974 ~ 11311011 (+) False ajm1
XR_004577453.1 lncRNA downstream 202848 11330733 ~ 11344595 (+) True LOC117596271
XM_034300946.1 mRNA upstream 30242 11025868 ~ 11096141 (+) False fer
XM_026922116.2 mRNA downstream 91173 11219058 ~ 11274500 (+) False mapkap1
XM_026922115.2 mRNA downstream 92047 11219932 ~ 11276976 (+) False mapkap1
XM_026922117.2 mRNA downstream 109002 11236887 ~ 11276976 (+) True mapkap1
XM_026921450.2 mRNA downstream 170095 11297980 ~ 11326055 (+) True ajm1
XM_026921453.2 mRNA downstream 170095 11297980 ~ 11326055 (+) False ajm1
TU455978 other upstream 746718 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1358347 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 1754853 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 1755246 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 1757055 9369261 ~ 9369328 (+) True LOC113531687
XR_003403209.2 other downstream 170095 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 2693903 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2697965 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 4233473 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4906938 16034823 ~ 16038605 (+) True LOC113531248

Expression Profile