Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577453.1 |
| length | 561 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 2 |
| gene id | LOC117596271 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 11330733 ~ 11344595 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU456412 | lncRNA | upstream | 19722 | 11297974 ~ 11311011 (+) | False | ajm1 |
| TU456419 | lncRNA | upstream | 44968 | 11285326 ~ 11285765 (+) | True | G384989 |
| TU456405 | lncRNA | upstream | 185706 | 11144743 ~ 11145027 (+) | True | G384977 |
| XR_003403219.2 | lncRNA | upstream | 198866 | 11130876 ~ 11131867 (+) | True | LOC113531091 |
| XR_004577443.1 | lncRNA | upstream | 202848 | 11126383 ~ 11127885 (+) | True | LOC117596264 |
| TU456445 | lncRNA | downstream | 3007 | 11347602 ~ 11347816 (+) | True | G385014 |
| TU456456 | lncRNA | downstream | 40913 | 11385508 ~ 11389515 (+) | True | G385025 |
| XR_004577406.1 | lncRNA | downstream | 282124 | 11626719 ~ 11640005 (+) | False | LOC117596234 |
| TU456631 | lncRNA | downstream | 282128 | 11626723 ~ 11640040 (+) | False | LOC117596234 |
| XR_004577407.1 | lncRNA | downstream | 282154 | 11626749 ~ 11640005 (+) | True | LOC117596234 |
| XM_026921450.2 | mRNA | upstream | 4678 | 11297980 ~ 11326055 (+) | True | ajm1 |
| XM_026921453.2 | mRNA | upstream | 4678 | 11297980 ~ 11326055 (+) | False | ajm1 |
| XM_034300913.1 | mRNA | upstream | 4678 | 11297980 ~ 11326055 (+) | False | ajm1 |
| XM_026921451.2 | mRNA | upstream | 4678 | 11297980 ~ 11326055 (+) | False | ajm1 |
| XM_034300914.1 | mRNA | upstream | 4678 | 11297980 ~ 11326055 (+) | False | ajm1 |
| XM_026921858.2 | mRNA | downstream | 117108 | 11461703 ~ 11517053 (+) | False | ttc33 |
| XM_026921859.2 | mRNA | downstream | 117242 | 11461837 ~ 11517053 (+) | True | ttc33 |
| XM_026921841.2 | mRNA | downstream | 298528 | 11643123 ~ 11681971 (+) | True | ptcd2 |
| XM_034300614.1 | mRNA | downstream | 299499 | 11644094 ~ 11681971 (+) | False | ptcd2 |
| XM_026921977.2 | mRNA | downstream | 373423 | 11718018 ~ 11832595 (+) | False | fcho2 |
| XR_003403209.2 | other | upstream | 19880 | 11297980 ~ 11310853 (+) | False | ajm1 |
| TU455978 | other | upstream | 951068 | 10378213 ~ 10379665 (+) | True | G384593 |
| TU455483 | other | upstream | 1562697 | 9765740 ~ 9768036 (+) | True | G384178 |
| XR_003403285.1 | other | upstream | 1959203 | 9371459 ~ 9371530 (+) | True | LOC113531683 |
| XR_003403274.1 | other | upstream | 1959596 | 9371060 ~ 9371137 (+) | True | LOC113531672 |
| TU457909 | other | downstream | 2477193 | 13821788 ~ 13824055 (+) | True | G386294 |
| TU457943 | other | downstream | 2481255 | 13825850 ~ 13828148 (+) | True | G386325 |
| XR_004577401.1 | other | downstream | 4016763 | 15361358 ~ 15367247 (+) | True | fkbp6 |
| TU459555 | other | downstream | 4690228 | 16034823 ~ 16038605 (+) | True | LOC113531248 |
| trnam-cau_49 | other | downstream | 4803765 | 16148360 ~ 16148432 (+) | True | trnam-cau_49 |
