RNA id: trnam-cau_49


Basic Information

Item Value
RNA id trnam-cau_49
length 73
RNA type tRNA
GC content 0.60
exon number 1
gene id trnam-cau_49
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16148360 ~ 16148432 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTCGTTGGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGgggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459824 lncRNA upstream 6121 16142010 ~ 16142239 (+) True G387933
TU459774 lncRNA upstream 50793 16097365 ~ 16097567 (+) True G387896
TU459763 lncRNA upstream 53581 16093466 ~ 16094779 (+) False si:ch211-284e13.4
XR_003403226.2 lncRNA upstream 110254 16035231 ~ 16038106 (+) False LOC113531248
TU459553 lncRNA upstream 161318 15942086 ~ 15987042 (+) False G387707
TU459828 lncRNA downstream 68605 16217037 ~ 16217667 (+) True G387937
TU459829 lncRNA downstream 69331 16217763 ~ 16218231 (+) True G387938
TU459830 lncRNA downstream 70333 16218765 ~ 16220819 (+) True G387939
TU459867 lncRNA downstream 201609 16350041 ~ 16361001 (+) True G387973
TU460063 lncRNA downstream 301032 16449464 ~ 16449667 (+) True G388145
XM_026921768.2 mRNA upstream 16571 16120792 ~ 16131789 (+) True LOC113531200
XM_026921730.2 mRNA upstream 30308 16108565 ~ 16118052 (+) True LOC113531178
XM_034300470.1 mRNA upstream 30308 16108565 ~ 16118052 (+) False LOC113531178
XM_034300471.1 mRNA upstream 30308 16108565 ~ 16118052 (+) False LOC113531178
XM_026921710.2 mRNA upstream 52176 16077089 ~ 16096184 (+) True si:ch211-284e13.4
XM_034300562.1 mRNA downstream 72542 16220974 ~ 16239151 (+) True zgc:163098
XM_026921733.2 mRNA downstream 107862 16256294 ~ 16302749 (+) True klhl13
XM_026921734.2 mRNA downstream 107862 16256294 ~ 16302270 (+) False klhl13
XM_026921735.2 mRNA downstream 125492 16273924 ~ 16302270 (+) False klhl13
XM_026921790.2 mRNA downstream 179716 16328148 ~ 16331254 (+) True LOC113531216
TU459555 other upstream 109755 16034823 ~ 16038605 (+) True LOC113531248
XR_004577401.1 other upstream 781113 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2320212 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 2324305 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 4837507 11297980 ~ 11310853 (+) False ajm1
TU460079 other downstream 397709 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 507237 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 1127067 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 1129458 17277890 ~ 17280519 (+) True LOC113531069
XR_003403218.2 other downstream 1130035 17278467 ~ 17280328 (+) False LOC113531069