RNA id: TU100005


Basic Information

Item Value
RNA id TU100005
length 264
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G84227
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17391684 ~ 17391947 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGGTGTGGATGAGGGAACTCTCCAGTGATCAGACAGGACTGGCAGTCCCACAGCATATAACAGCTCACCTCTACATTTCCACAGGGAGAGAAATTACTGCACAGTCCTGACAAGCTCCCTGATCGCTGCTCTAAACAATGCCGCTCTCCACCTGCTGCATATCCCCAGCACCTGCTTTACCAACAtcttctctctatctgtctatatcAGAGCAGATTTTGTTGGTGTCTGCAGGTTTCTCTATCAGGAGAATACTGTATTCA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99971 lncRNA downstream 18472 17371979 ~ 17373212 (-) False sp3a
TU99968 lncRNA downstream 18472 17372077 ~ 17373212 (-) False sp3a
TU99969 lncRNA downstream 18472 17372178 ~ 17373212 (-) False sp3a
TU99970 lncRNA downstream 18472 17372322 ~ 17373212 (-) False sp3a
TU99960 lncRNA downstream 45334 17332492 ~ 17346350 (-) True G84189
TU100003 lncRNA upstream 15271 17407218 ~ 17431431 (-) True LOC117597450
XR_004578290.1 lncRNA upstream 16802 17408749 ~ 17431322 (-) False LOC117597450
XR_004578291.1 lncRNA upstream 16802 17408749 ~ 17431322 (-) False LOC117597450
XR_004578289.1 lncRNA upstream 16802 17408749 ~ 17431322 (-) False LOC117597450
TU100221 lncRNA upstream 303343 17695290 ~ 17697086 (-) False evx2
XM_026912831.2 mRNA downstream 10512 17372058 ~ 17381172 (-) False sp3a
XM_034304695.1 mRNA downstream 10513 17372058 ~ 17381171 (-) False sp3a
XM_026912829.2 mRNA downstream 10513 17372058 ~ 17381171 (-) True sp3a
XM_026912830.2 mRNA downstream 10514 17372058 ~ 17381170 (-) False sp3a
XM_026912996.2 mRNA downstream 141852 17216721 ~ 17249832 (-) True ppp1r9ala
XM_026913145.2 mRNA upstream 45211 17437158 ~ 17443522 (-) True cir1
XM_026912530.2 mRNA upstream 57933 17449880 ~ 17464276 (-) False gpr155a
XM_026912529.2 mRNA upstream 57933 17449880 ~ 17464275 (-) True gpr155a
XM_026913156.2 mRNA upstream 73741 17465688 ~ 17472291 (-) False wipf1a
XM_026913157.1 mRNA upstream 73741 17465688 ~ 17472217 (-) False wipf1a
TU99754 other downstream 351841 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1170818 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2314489 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2554291 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2838225 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 2089173 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2176804 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2834781 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3744099 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3744099 21136046 ~ 21144621 (-) True phgdh

Expression Profile