RNA id: TU100224


Basic Information

Item Value
RNA id TU100224
length 1345
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G84394
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17726653 ~ 17727997 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaacattttgatttggAAGCTTATACTGAGTACTccgtccaaaaaaaaaaataataaaaataaaataaaaaaatagcagcAAGAGTATAACCTTTTACTTAAACAACAGAAAAAGCAGCAGTTATCATATAAGTAAATTGTAACCAATGAAGTAGGCTATTTGTAAGAACCATGTAGTGTGTATGGGTCGGGATACTGGTAAAAAACTGACTCATTGATATGTctgatataattttatttactccTCCTTAATTACTGTTAACACCAACCTATTCattcaataaagaaaaaaaaaatcgatatacatctatctatatctatatctaggCTATATCCCTATCTATATCTTAACATTTAAgttcttttctgttttgaaatCATCATGAAGCACTAGTGTGATCATTTCATAACTTTGAGTAGACGAGAAAATCCCTCATAAAATGCATTAccattttgtgctttattttgcGCAGCAGCCTTTTTTCTGAAGTAATTTTCGCAGTATAGATTAGTAAGCACGtggtttgtattttttctgCGCATGCTTCCACAAAAATAACGTTTTTAATCAGCACCCTGCACCCATGTTTTCAAAGAACTATATTGCCCTCTAGCGGTAACCATATCCATTTTAATGCTCTATTCAGTGATGCATTTAACCGCAAAGATACCCTCAAAATatagttaaaatatttatgctatCGGATCTGCCTGCAGCACAACATGCAGGCTTTGAAGTTTTGAATACAGTATTAACACTGTGCCGATCCATGTAATTACTTAGCTAACATTTTAATTGTCTTGTGACTGTATAGATGAATATTTTGATAGGGTTTTTATCTCTCGCTATCACTAAGCAAACACTCGTAAAAACCGATTCCTTAACTTCTAGAAATGCgtagattaattaataaaaacctgaatTTTAGGCAACAGTCAAAGTGAAGTGTTGCAGCCCATGAGTGGAAATGCATTTGGTGAATAAACCTGACTTTCCGTGTGTTTGGGTCGATTTCTTTCAGTCTCACCGACAGACAATTTATCGACCAGACACCCCGTAGAAAAGTGTCTGCATTTTTGGTTGTCAGCAACAGACGCAAACACCCAACTAGAAGGTTTTCAAAGCAGAGTGCAATTACTGTCTTAGACCATAAAGTCATTTAGACCAGACGTCTAGTCTTCTCTATGGCTTTATTGGACCCAGTCTCTTCCTGCTCTAAAGTAATTCTAAAGtaaggtttaaaaataaattgggGTTCTCTACAACACTTATTTCGCAATCAGGAACGGTTTATTAGGCCTACCGATATCCTTTTAgactaaacttttttttgacaTAAGAGC

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100221 lncRNA downstream 29567 17695290 ~ 17697086 (-) False evx2
TU100003 lncRNA downstream 295222 17407218 ~ 17431431 (-) True LOC117597450
XR_004578290.1 lncRNA downstream 295331 17408749 ~ 17431322 (-) False LOC117597450
XR_004578291.1 lncRNA downstream 295331 17408749 ~ 17431322 (-) False LOC117597450
XR_004578289.1 lncRNA downstream 295331 17408749 ~ 17431322 (-) False LOC117597450
XR_004578231.1 lncRNA upstream 12640 17740637 ~ 17744020 (-) False LOC117597384
TU100243 lncRNA upstream 12642 17740639 ~ 17744025 (-) True LOC117597384
TU100258 lncRNA upstream 105378 17833375 ~ 17833589 (-) True G84411
TU100815 lncRNA upstream 403413 18131410 ~ 18131998 (-) True G84881
TU100814 lncRNA upstream 405405 18133402 ~ 18133689 (-) True G84880
XM_026912926.2 mRNA downstream 26673 17696264 ~ 17699980 (-) True evx2
XM_034304789.1 mRNA downstream 47492 17667567 ~ 17679161 (-) False lnpa
XM_026912536.2 mRNA upstream 153774 17881771 ~ 17892018 (-) True nfe2l2a
XM_034304176.1 mRNA upstream 154204 17882201 ~ 17896933 (-) False nfe2l2a
XM_034304177.1 mRNA upstream 154204 17882201 ~ 17887072 (-) False nfe2l2a
XM_026911925.2 mRNA upstream 209056 17937053 ~ 17991511 (-) False pde11a
XM_026911916.2 mRNA upstream 209056 17937053 ~ 17991509 (-) True pde11a
TU99754 other downstream 686810 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1505787 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2649458 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2889260 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3173194 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1753123 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1840754 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2498731 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3408049 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3408049 21136046 ~ 21144621 (-) True phgdh

Expression Profile