RNA id: XM_026913253.2


Basic Information

Item Value
RNA id XM_026913253.2
length 7796
RNA type mRNA
GC content 0.47
exon number 38
gene id LOC113526313
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18913387 ~ 18968492 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacacactctgagacAACAGCCCTGCTCCACTCCACAGTCTGACATCTGCTCACTGGCGCGTCGCTTTTTCTAAATCAGGAAGAAACACAGATCTGAATGAAGACGCTGGAAGCTGCAGTTTAAACACAAGAGCCGAGACCTAAAGGTGAAAACAGAAAGGTTGTGGATTACTCATGTCCCTGTACTGAAGTTCACTTCATATTAATCATCATGGAGTCTGGAGAGAGATTACCATCCTCCACCCACTCCCAGCCATCCATCAGCTCCTCTGCCCCTCCTCCAGCTTCATCACCAAACATAACAAGCGATAGTGGACGTCTGTTTCAGCTGGGTAGTGATCCAGGTTTTAGAACGTCTTTCCCCATGTTGAGCCATCCAGCATTCAGGCTGTATGCTCCTCTGTCTGGATGCTCTGATTTCAGAGGCCTGGGGATTTTGGGATTGCAGGGAAGCTTAGCGTCCCACCCACAACTTGGAACGTTTCCAGACTGGTGGCGGGCGTCCGATGCACAACTTCATGGAGCTGCTGCGTTCTTTCCTCCTCTCCTGGGCCTGCCTCCTCTATTCACACCTCCATCACTAAGCCAGTCACACACTCCCAAGAAGAGCACACTGAGCTCTGCTAAAGGGTTGAATGGTGCAGTCAGTGGCAATGGGAAAGCAAAATCTGCTTCCTCTGGTGCAAGCTCTACCTCCTCCTCACCCTCACCAGCTTATACAACCTCTGAACAGACCAGTACTCTCAAATCAGGTCTGAACCCTCAAAATAAGACCAACAAAACCATCCTCAACCACTGCAAAACCGTACAGTCAGCCACCAATCCTCCAAACTGGAGCAGGAAGCAGAAGATCAAGACAGATCAAGCCCAAGGAAAAACCAGCCACAAAACAAAAGAGAAACTCTGTATGACAGTGCCAGAGATTTCCAGCAACAGTGATAGCCAATCAGGATCCAGTTCTGACAGCTCCAGTGACACACTCAGCAGTTTGGGCTCTGTCGACCTGGagaatgaagatgatgatgaggatctGAGTGTATGCAGCATAGACTCAGACTCTCAGAGAGGACAAAGAGTGAGCAGGACGGTTAAGGACTCCTCACAGATGGACCAACCTACAGGTTGCTTTTCTAGTAGACCAGATATGTGCTCTATGGACCTAACACAATCCCAGGCAGCTCCATTACTCTTCCACAGCTCAGAAACCAGAGAAGAGCACAGCAAACACACCAGTGTCATCCAGGCCACAGGAGTAGCAGGCAGCACCAACGCTTTCTCCCTCCTTCCACAGCCCAACCGAGATGCCTTGTCCAAACCTTTATGTCTCACTTTGTCTTCCAAACCTTCCTCACTATCGTCTTCTCCCAaacctctctctgtgtcttcaTCTCCAAAGCATCGCTCTGTCTCTGAATCTCCAAAACCACTTTCTCTTGCCCTCTGTCCAAAGCCAacatctctctcctcctctcccaaCACCTCCAACATCACCTCCTCACCCAAACCTTCATCCTTAATGAAAGCCAGGAGTTCTCCAGACAAGTCCCTCCTGCACATCAGTGACTTTAATCAGCACAAGCAGGCAAAGGAACACCAAGAAGCAGATAAATCCCTGAAGATAAGTATGTCATCCTCCTCACCATCACCTCAGAGTAGTCCTAAGCTCAAATCCCCCAATCCCCAGCACTCCAACCTGTTTCTCACCTCCACCCTGCTGAAGAAGTCTCCCCATCTTAATGGAGTTGTTCAGAGTACTGTGCAGGATGCTCCCTTGGCACTTATTACCAAACCTCGCTCTGACAGCTCTAAAACCCCAGATAAGCCTTTACTAGCAGCCACCAGTCCCTGCTTTAACACCCCCATCAACCTGAGCACTGGAGCCAGACAGTCTTCCTCTGGACCTCCTGCCTCAGACCGAGTCTCCACACAGCGACAGTCCCATAGGGCAAACACAGGGTCACTGCTCCAGGGGAAAATGTTCAGGGAAATGGAGTCTAACATTCCCAGCAGCAAAGACTCAGATGATTCAGGGGAatatgaggatgatgaagaggaagatTTAAGTGACAGTCTGTCAGGCTCTGGCAGTAACCTGGATACTGACTCTGATAATGATGAGGAAGATATTGAAGATGACGAAATGGATACCGACACAGAGAGTCACACAGAGAGCATGCCACTTAAGCTCACTAAAAGCCCAACCTCTTTGACAGACCCTTCTACTGGCAAGATCAACAGCTCCAGTTCACTTAACTTGCAAATCAATAAACCTGCTAAGACTTCGCAAACTGTGAACAGATCTTGGGCTCTGACCTATCACAGCACCCCAAGCTCATCGTATGTGGCCACGCCCCCAGCAAAGAGAAGAAGAGTGACAGATGAGCAGGCACTGCGTAGGCCTCTTGAACACGGGTGGAAAAGAGAGACCCGGATCAGGAATATCTGTGGGCGTGTGCAGGGAGAAGTGGCCTACTATGCTCCCTGTGGCAAAAAACTCAAACAGTACCCAGATGTAATGAAGTACTTAACAAGAAATGGAATAAGTGAGATCACACGTGACCATTTTAGCTTCAGTGCTAAAATAAGGGTTGGCAACTTCTATGAAGCTCGAGAAGGACCCGAGGGTTTGCAGTGGTGCTTGCTGAAAGCGGACGAGATTGTTCCCTGTATCTTGGCAATGGAGGTACATAGAGGTCATCCTAAGAGTCTGGAGCTCCAGCGTCATGATGATCCCTTCCATTCTCACCGAAGGAAAAGACGACCACCTAGTGTGGGTGAGACTGAGGTGGCTAATGCTGCGTTGATTAAACTACAGCGGAAACTGGAGGCACAGGAGATTGCACGGCAGGCTGCTCAGATAAAGATGATGAGAAAGCTGGAAAAAAGGGCTCTTGCACAAGCTGCTAAAGAGGCCAAAAGACAAAAAGCCCTGCTGGCAGCAGAGGAGAAGCGCAAGCAGAAAGAGCAGCTGAAGATTCTAAAGCAGCAGGAGAAGGTCAGGAGACTTGAACAAATTCGTGTCGAGAAGGAGCTTCGAGCTCAGCAGATACTTGaggcaaaaaggagaaagaaggagGAGGCCATCAATGCAAAAACACTAGAAGCTGAGAAACGAATGAAGGAGAAGGAACTGCGCAGGCAACAGGCATTCATTCTGAAGCAACAGGAATTGGAGAGGCATAGACTAGAAATGGTATGGGAACGGGAGAGACGAAAGCAGCACATGATGCTGACAAAAGTCATGGAGGCTCGGAAGAGAGCTGAGGAACGAGAGCGCCTGAAGCAGGAGAAGAGAGATGAGAAACGCCTAAACAAAGAGCGCAAACTGGAGCTCAGGCGGCTGGAACTAGAGATGGTTAAAGAGCTGAACAAACCCAATGAAGACATGTGTCTATCAGATCAGAAGGTTCTGCCTGAGCTGTCGCGGTTACCAGGTCTTCTTTTACCGGATAGCTGTTTTGGGGACTGCCTGATGGTGATGCAGTTCCTGCGCTGCTTTGGGAAGGTGCTGCATTTGGACCGCAGCACTAAGCTGCCCACCCTTCACATGATACAGGCAGGACTCCTCAACCTAAGCCCCAGTGCAGGTCAGCTGCAGGATGTGGTCATTGGCTTGCTctctgctgcagtgtgtgatcCAGGCTTTCCACCAGGATCAGTGGCTAAAACAGCTCTTGGTGAGCATGTTTCCAGTGTGGAGATAAACCGGGAGAACATGTCAGAGATTTTGCAGATCTACATGGCCGCTCACTGCAGTCAGACAGAGCTCTCACCATTGGTAGAGAGTTTAAAGACCAAAGGCTTTCAGGCCCACACCCCGCCTCAGAAAGCCTCCATGATGGCTTTCTTGGTCAATGAGCTGGCCAGCAGCAGGAGTGTGGTTGCGGAAATTGACAAAAGTATTGACCATATGACAAACCTAcggaaagaaaaatgtgtcaatGAGAGTAGCCTTCGCAAaCTGAGAAGCATCTATGCTAAACGGACTGGGAAGCGTGATAGCAGTGTAGGAGGCGAAGAGAGCCAGGCATTGGGAACACCTACCACTGGTCACAAACGCAAGAGAAAGGTTGGAGGCattgaggaagatgatgatgaggatgatgacaGTAATGATCTAGGAGAGGAGGAcgaagatgaagaggaagatggAGGAAAGAAACGCAAGAAAACTGAGACATGTGAGGAAGAGGATGATGAGGATCCAACAGCCAGTGTGGAAGAGCTAGAGAAACAAATAGAGAAATTAGCCAAGCAACAGCTTCTGATCCGCCGTAAGCTGTTTGAGTCCTCCCATTCCCTGCATTCGATGATGCTAGGGCAGGATCGCTATAAGAGGCGCTACTGGGCCCTTCCTCAGTGCGGAGGGGTGTTTGTTGAAAGTACAGTGAGCAGAGAGGatCCTCAAGGGCTTCAGCAAGAGTCTGAGAGGTTGCAGAGTGCTCAGTGGATTTCAGTGAAAGAGGAACCCACAGAGGTACCAGCTAAGAAACCTTATGACAGTCCACAGGCAAAGCATGAAAATTCCTGTCTGGATGTACAGCAGGAGAATGGCTCGCTCAATCTGTTCCTGCAGAAGCCAAGTTCTTTTTCCAAACTCAGCAAACTGCTAGCGGTCGCAAAGAAATCCTGCAGTGATCCTCAAGGCGTAATTTCCACTGTTTCCCACTTACCTACAAATGCTTCACCAATGATACCCAACAGCCCCTCTACTAACTTAAACCGGGAAACTAAATCTGAGGTCAGTACTCTTCAACTAAGCCCTGCCCACGTTGGCAGTCGGCAACATCATCTTCATAGTGACCAACTCTATAGTACGCTGGCAGAGAAACATGCTCACTGGTTCAGCCTGCTGCCACGTTCACCATGCGATGAGTTTTCTTTGACAACCAGTTCTACAAATCCATCATCCTGCAGTGCCAAAGCCTCATCACCTGCCACCAGCAACAGTATAACCCAGTCCACCTCCGCTTTCTCCTCCGGCAACAGCCAGAACATCACCTCTTCTGTCAGCCCCTCTGCTACTGCACCACTCAGTAACTTTTTAATAGAAGGACTTCAGATGAAGCACATGATGGGCCTGCCATTTCCTCTCTGGCAACCTGAAGTGATCAGTCCAAATATGACCTTCAAGGGCTTGTCCATGCCCTTCCTGACCCCCAGTGTGGCCATCAGTAAGAGTGAGTCCCCAGTACCATCGGGTGAGAAATCCCCTGCTCTAGAAGTGGCCAAAAGCCAAGACCTCCCCTCTCCACTACCTATTCCACAAGAGATGCTCACTGGGTGGTGGAAGGTGTCCAGCTCTGAAGAGTTAAGCCAAATAGTAAGTGCCTGTCACCCTCGTGGGATCAGAGAGAGAGTCCTACAGAAACAAATCCAGAAATACATGGAGTACCTCACTCAAGTCTGTGCCAAGAACAAAGACGCTACTGTGATTGATGTACGTGAGCTGGAGCAGAGCCAGGTGTGCGAGGAGACGGTGCAGAGATGGTGTGTTGAGGAGCACGCCATGGATATGGACATTGCTGTGCTGCAACAGGTGGAAGAGCTGGAGCGCAGAGTCACCTCCGCCAGCCTACAGGTCAAAGGATGGATGCCCACAGAGCCACAGTCAGAGAGGGAAGACCTGCTCTATTATGAGCACAAGGCTGTGGGCAAGAATGAAAGCACAGACATTGTGCGACACGCCAATAATCCACTGGACATAGCAGTGGCGCACCTGTTCGAGCTGGAGCGGAACATCGAAAGAAGGTACCTGAAGAGTCCCTTAAGCACCACCATCCAGATCACTCTGGATAACCGGGGTATGGTTAGCATACCGGCTCCTGCGACAACAGCTAGTGCTGAGTGTGATGGAGGTGGAGAAGACTTGGCCCCAGGGTTGAAGCTATGGAGGAAAGCACTGCAAGAAGTGCGTAGTGGTGCCCAGCTTTCACTCTGCCTGCAGCAGTTACAGCGTTGTATTGCATGGGAGAGATCCATCATGAAAGTGTACTGCCAGTTATGCCAGAAGGGGGACAAtgaagagctgctgctgttgtgtgATGGCTGTGATAAAGGATGCCACACATACTGCCATAATCCCCAAATCACTACTATACCTGAGGGAGATTGGTTCTGCCCTGCCTGCATAGCCAAGGCAAGTGACTCGCCTCAGAAGAGTAAGAAGCAGGCCAGTCGGAACAGTGGAGGAGGCGAAAAACTGTCTGGAGCCAAACGCAGTAAGAAAGCCTGTGTGACAGGAGAGGGCTCGGAGAATGACACAGCCTGCACCAGTGCCAGCAGCACACCCaagaaaggaggaaaggaaacaagaaagagaaaaatggaggACAACCTTTGCACCAACACCACTAAGCAGGAGAGCGCAACACAAGTTACAAATTCTAAAACAACCCGAGACAACAGTAAAGACCTGGAGCTCTGCAGATTGCTTTTGGCAGAGCTGCAAGCTCATCAGGACGCCTGGCCGTTTATGACACCTGTCAATCCCAAATCAGTCCCTGGATACCGCAAAGTCATCAAGAAACCCATGGACTTCTCCACCATTCGTGAGAAACTTTCCAACAGCCAataCCTGAATCTGGAGACTTTCATCATTGATGTTAACTTGGTTTTTGAGAACTGTGAAAAGTTCAATGAGGACAATTCTGACATTGGACGTGCGGGACACAGTATGAGAAGATTTTTTCAGCGGAGATGGACTGAGCTCTTGaaacaaataaactaaaattgTCTGAAAATCCTCAGAAAAGTAGAAATGACTACTGCTGCTTTAAATTTGTGATCAAGCAAGCCTTCATCTTCAAAGTTATCCTTTACTCACTCACTTCACTGGTTTTGATCATGAGCCAAAAGTGCAAGCAGTTCAGCAAGTCCTCATGTTGAATGGTGCAGTATGATAACGTTAATCCAGAGTGTTTCAGATAATATAGGGTGTCTTTTCAAGTGCAATACAAATTCTGTTTCTTTACAGAACTTTTATCAACTACAGCTGGGACTGACAAAAGAGCTTTCCACTCTGTAAAAATATActtgatgtttttctttttttttttttaatataaactttacTATTATAGTGaatgtattgtatttattttttttattatttataattaatttggTATTCTTTTTCTATGAAAAggaagaacattttaaaaatgcattaaagcatttttagtaaaatatatatatatatatatacatatatatataaaaagaaatgtttacactgttaGGTGCTTTAATGGTACCAGGAAACACATCACAGTATTGCTGTATAACTGAATTAGcgcaaaaaaaatgttttgaccGTTGAAGAACAGAGACtattagatgtgtgtgtacatagtgTCTCCATGTctaacaatgtgtgtgtgcaattttgCAAACATGTTCTTTGCCATTTTTTCTGTTGTCTTTAAAGTAGCATAAATTTAAAATCTTAAGTTaatgaagaaaataagaaagagggagaagagaTCATACTGTGACTAAATCGAAATGCCAGACTACACAGAGTTGAAAATTAGCATAATGCATAGTGTTGAGGTATAGTATTGAGCTGTGGGGTTGTAAAGTATGGTTGAAGCATAGTGTTGATGTTTAGGTACGGAGCATAGAGTGAAAATATAGCATTAAGGCATATCATGATGTTAAAGTGTAAACATGAGATTTGAAGCATAGCAATGAATTTTAGTTAAAGTATGAGTTTCAAGTTGGTGCATAATGTTGATACATGAGATGTaacacttttaataataaacattctaacaaagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101041 lncRNA downstream 246421 18667991 ~ 18668211 (-) True G85069
TU100942 lncRNA downstream 358767 18540353 ~ 18555865 (-) True G84975
TU100817 lncRNA downstream 777549 18135669 ~ 18137083 (-) True G84883
TU100816 lncRNA downstream 779018 18134836 ~ 18135614 (-) True G84882
TU100814 lncRNA downstream 780943 18133402 ~ 18133689 (-) True G84880
TU101194 lncRNA upstream 69735 19038227 ~ 19038432 (-) True G85205
TU101200 lncRNA upstream 82906 19051398 ~ 19053050 (-) True G85211
TU101381 lncRNA upstream 300170 19268662 ~ 19268952 (-) True G85382
TU101476 lncRNA upstream 495660 19464152 ~ 19478394 (-) True G85459
TU101477 lncRNA upstream 496283 19464775 ~ 19467176 (-) True G85460
XM_026909981.2 mRNA downstream 158412 18751914 ~ 18756220 (-) False spc25
XM_026909992.2 mRNA downstream 158490 18751914 ~ 18756142 (-) True spc25
XM_034304900.1 mRNA downstream 158636 18751914 ~ 18755996 (-) False spc25
XM_034304810.1 mRNA downstream 211084 18670051 ~ 18703548 (-) True stk39
XM_026913146.2 mRNA downstream 211087 18670051 ~ 18703545 (-) False stk39
XM_026912601.2 mRNA upstream 9695 18978187 ~ 18984693 (-) True cd302
XM_026912447.2 mRNA upstream 23556 18992048 ~ 19044656 (-) False LOC113525848
XM_034304809.1 mRNA upstream 23556 18992048 ~ 19034060 (-) False LOC113525848
XM_026912448.2 mRNA upstream 23556 18992048 ~ 19029273 (-) True LOC113525848
XM_026912485.2 mRNA upstream 175700 19144192 ~ 19145405 (-) True gcgb
TU99754 other downstream 1874789 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 2693766 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3837437 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 4077239 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 4361173 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 512628 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 600259 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 1258236 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 2167554 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 2167554 21136046 ~ 21144621 (-) True phgdh

Expression Profile