RNA id: XM_026912818.2


Basic Information

Item Value
RNA id XM_026912818.2
length 3610
RNA type mRNA
GC content 0.44
exon number 15
gene id grb14
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19443091 ~ 19494515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGGTGCTGACTTtccatttatctgtttttttttttaatctgatattttgaatgtatttccCCTGATGTGTGAGTTAAGGCAAGAAACGGGTCATACAGCGAGCTATGATTACACAACAGATGATGCGGTGGATATAAAGCTGGGCTCCATGAGTGCTATGAGTGACTCTCTGGATGAGCTAGACACTCCAGGCAGCCTCGGTGACAAAGCGGCCATATTTCGTGACGGGAAGGGCAATGTAAGCATGCTCAGTGGCGGCGACCATGCCCTAATCGCTCTGCACTCGCCCTACCAGCCGCCCGGTGCCGTGCACAACAGGACTGCCactgcagcagcagctctcTGCAGAGGGAATAGgAAATGTCGACAGGGAGAGGAGATGCAGATGAATATGGTCCAAAACCCTTTCCCAGACCTGTTTCCCTCTGAGTGTTTGTTACCCTGGACCAAAAACAGCGCAACTCAGGTGATCAAAGTATACAGTGAGGACAACAGCAGTCGAGCCGTGGAGGTCCCCAGTGACATCACTGCCCGGGATATCTGCCAGCTGTTCATTCTGAAGAACCACTGCATTGATGACCACAGCTGGACATTGATTGAGCACCTTGCTCATCTGGGTATTGAAAGAATCATAGAAGACCATGAATCAGTCCTGGAAGTGCAGTCTAACTGGGGCATGGACTCAGACAGCCGCCTGTATTTCAGGAAGAATTATGCCAAATATGAATTCTTCAAGAAACCtctgGATTTTTTTCCAGAAAGCATGGTGTCTATATCGAGTGAAGCCAATGGCCTCATGAACCACTCACAGCTTATCCAGACATTTCTCAACTCCAGCACATGTCCTGAGATCCATGGCTTCCTCTACTCAAAAGAGCAAGGCAGGAAGTCCTGGAAGAAGTTCTATTTTGTGTTGAGAAGGTCTGGGCTATATTTTTCCAATAAAGGCACATCAAAGGAACCCAGACATCTGCAGTTTGTTGCAGAGTTTTGTGACAGTGATGTCTACACTTTGTTATCAGCCAGAAAAACACATGGAGCTCCCACAGACTACGGATTCTGTATAAAGCCGAGTAAGTCATGCGCAGCTCGGGACCTCAAACTGCTGTGTGCGGATGTGGAGCAGACCAGAACCTGCTGGATCACAGCTATGCGCCTCTTCAAGTTTGGGATGCAGCTGTACCAGAACTTCATCCAGCCCCATCAGAAGCAGAAAAGCTCTCCAATGagaagcATTTCAGAGAACTCTCTCGTGGCCATGGATTTCTCAGGGCAGAGGAGCCGTGTGATTGATAATCCATCAGAGGCTCTGTCAGTGGCTGTGGAGGAAGGTCTTTCATGGAGGAGAAAGAGCTGCCATCGACTCAGCCATGGAAGCTGCTCCCCCTCCCAAAGCTCCCTATCCAACATAGCAATCCACATGGCTCAGCCGTGGTTCCACAGCAAACTGTCTCGAGACGAGGCTCACAAACTGATCACCCAGCATGGCCTCATTGATGGAGTTTTCCTCTTAAGGGACAGCCAAAGCAACCCCAAGACCTTCGTCCTGTCCCTGTGTCATGCACAGAGAATCAGACACTTTCAGATAGTCCCTgtTGAGGATGATGGCGAGCTCTTCTACAGCCTGGATGACGGAAACACACGCTTCAGTGATCTGCTACAGCTGGTGGAGTTTTACCAGCTAAACCGTGGAGTGTTACCCTGCAAGCTCAAACACCACTGTGCCCGAACCACCCTGTGAATCCACCCCGAAACCCCTGTCCAATCACCCTTTGACCTGTCAAATTGTTTTATGGATTCCCTCAAACCTTCTACTCCAAACCCAAAATCACCCTGCTCCAAGCCCAGACTCGTAAACCTGGTCTCCTGTCCCTCTACCAACCCTGAGGTTCACCTCCGACCCCTTCGCGCTCCATCACACgaccacacacattcacagggTGACTCTGGACAAATTGCCAGCGCAGCTCGTGCCTTGGACAGGAAACTCGAACAGACTCTTCCTGTCTAATTTCAATGTTCACTCCTATGTGAAATTATGATCATAAGCTCTGGGGTGCTGCAGGATCAAACAAACTTGAGAAAGGACTTGTTAAGTGCTGATGAGTGTATGAGAGTCCACTCTGAGACTGTGTTTTATAATAAGGCAGGCTTGAAAGCTCTTTATGATGAAAGTTTTGGTTGATGTACTGTACAAAAGAGTAGACATTGCAGCTTGAATGAGTCGTATTTGAAGCTTTCGAATTCTGAGGTGATAGGAGAAGCTAAAGTAGCAAACTGTCAGTCGGAGCTCCGCTCTGAGGGCTGACAACCTGTGTGTCCATATCATGTGAACAGAATAGACAGACATGGTACAGCCATAATCACATGTGCACAATAAGCTGAAACTGTTGGTTTTGCCAGCAGGAAGAGGGCCTTCGGGGGATCTGGACACCCTCCTTTGAGCTTTTgggtaaaatgttaaaatgtctcCTTCTTTAACTCATGTGACAAAATAATTCAggtattttataaaaatgtgatatgtGTAGTTTGTTTGAGAGGTGAGACTTTGCTCTGTGCATGCTGTAGGCCACATTCTGTCCAAATGCAATGGGTTGTGTTAGCATGAAAAGGCAGCTGTCGATGCTGCTTCACACACTCCAAGCAGACATACACACTTCCTTTTGGTCTTTGCTCTACCAGAACATGGAAtgtacatacacagacacatacagtaacactcaccataaacacacacagcaccctAGAGTGATGGATAGTGCTGGATCACACTATATGTGGTTTACATGCTGAACATTTAAACTCGGACAGAATGTGTGACGTTGCTTGTTATTGATAATTGaacaaatcaaattttatattaaaatgcatattttatggATACTTGTTAAGATTCAGGTTCACAGTGTTTAACACCTGAAGTGGTAAGTTTCTGTTTTACAGAACATTGAAGATGACCACTACAATCATTGTCTGGCGATGTGCTGTTTCTTCAGGTTGTGAGATTTCACCCTCAAACCTTCACTTAAGTAAACAAAAGCTATTAGTGATTGCAAATCACACATGACTAACATGTtgtactgttaaaaaaaaaaacttaaataaagaACACTTGATAAAAAGTTTtaatactgttaaaaaaattaatgcatttGAGTTAAAAGCCAGGTCTTGTTAGGTCTTGATTTCTTTCTTATGAATGAAAACCATGCTTATATCTTAGGttgcaattcttttttttttttttgtagaaaagcAAACAacttttctgtctgtgtgtacgACTTGAGTCATGTTTTGTAAACTTTAGTATGCAAAATGCACCGACCCCGAAtgataaattgttttatattcatggataaaagaaaatgcatttagAAAGGTCTTGATTCGCCATGGTATTTGCACTGTAGTCGAAACACTGGTAACTTTTCATTTCCAATGCTGAGGGATGACTGTGACTTTTAAATCCTTTTGGCAAGGAGTAGATTTATTCCCATGCTTCTGCTGAGAAATGCTCTGCTCTTTTGATACAGGCCCGGACAGTGTAGTGTATGTGAATTGACACTGTTTATATATGTCTCCTATAAAACTGGCTTTGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101381 lncRNA downstream 174139 19268662 ~ 19268952 (-) True G85382
TU101200 lncRNA downstream 390041 19051398 ~ 19053050 (-) True G85211
TU101194 lncRNA downstream 404659 19038227 ~ 19038432 (-) True G85205
TU101156 lncRNA downstream 527808 18913387 ~ 18915283 (-) False LOC113526313
TU101041 lncRNA downstream 774880 18667991 ~ 18668211 (-) True G85069
TU101516 lncRNA upstream 49096 19543611 ~ 19543850 (-) True G85493
TU101836 lncRNA upstream 409415 19903930 ~ 19904289 (-) True G85749
TU101854 lncRNA upstream 442392 19936907 ~ 19937123 (-) True G85767
TU101855 lncRNA upstream 442889 19937404 ~ 19937613 (-) True G85768
TU101866 lncRNA upstream 455076 19949591 ~ 19950708 (-) True G85774
XM_026913027.2 mRNA downstream 71003 19330693 ~ 19372088 (-) False fign
XM_034304786.1 mRNA downstream 71148 19330693 ~ 19371943 (-) False fign
XM_026913028.2 mRNA downstream 71507 19330693 ~ 19371584 (-) True fign
XM_026913110.2 mRNA downstream 193884 19184821 ~ 19249207 (-) False LOC113526240
XM_026913109.2 mRNA downstream 193884 19184821 ~ 19249207 (-) True LOC113526240
XM_026912404.2 mRNA upstream 2291 19496806 ~ 19536404 (-) True cobll1b
XM_026912411.2 mRNA upstream 2291 19496806 ~ 19536403 (-) False cobll1b
XM_026912416.2 mRNA upstream 2291 19496806 ~ 19535965 (-) False cobll1b
XM_034304586.1 mRNA upstream 2750 19497265 ~ 19524357 (-) False cobll1b
XM_026912423.2 mRNA upstream 2750 19497265 ~ 19524357 (-) False cobll1b
TU99754 other downstream 2403248 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 3222225 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 4365896 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 4605698 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 4889632 14552451 ~ 14553459 (-) False med14
TU101560 other upstream 74236 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 732213 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 1641531 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 1641531 21136046 ~ 21144621 (-) True phgdh
TU102877 other upstream 1805372 21299887 ~ 21305100 (-) False dhrs9

Expression Profile