Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU90017 |
| length | 959 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G75880 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047599.1 |
| NCBI id | CM018545.1 |
| chromosome length | 32114633 |
| location | 1849237 ~ 1873669 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04512 | ECM-receptor interaction |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU90038 | lncRNA | downstream | 30054 | 1801272 ~ 1819183 (-) | True | G75889 |
| TU90044 | lncRNA | downstream | 30054 | 1807625 ~ 1819183 (-) | False | G75889 |
| TU90039 | lncRNA | downstream | 30054 | 1810898 ~ 1819183 (-) | False | G75889 |
| TU90040 | lncRNA | downstream | 31327 | 1801272 ~ 1817910 (-) | False | G75889 |
| TU90034 | lncRNA | downstream | 35446 | 1810898 ~ 1813791 (-) | False | G75889 |
| TU90097 | lncRNA | upstream | 60972 | 1911196 ~ 1917438 (-) | True | G75925 |
| TU90099 | lncRNA | upstream | 62907 | 1913131 ~ 1925253 (-) | True | G75926 |
| TU90101 | lncRNA | upstream | 63793 | 1914017 ~ 1914729 (-) | True | G75927 |
| TU90126 | lncRNA | upstream | 95749 | 1945973 ~ 1946176 (-) | True | G75947 |
| TU90223 | lncRNA | upstream | 263966 | 2114190 ~ 2114599 (-) | True | G76013 |
| XM_034304840.1 | mRNA | downstream | 102206 | 1723257 ~ 1747031 (-) | True | mlphb |
| XM_026911002.2 | mRNA | downstream | 225188 | 1615900 ~ 1624049 (-) | True | med4 |
| XM_026911019.2 | mRNA | downstream | 252758 | 1591955 ~ 1596479 (-) | True | htr2aa |
| XM_026911013.2 | mRNA | downstream | 282450 | 1554942 ~ 1566787 (-) | False | LOC113524666 |
| XM_026919622.2 | mRNA | upstream | 8038 | 1858262 ~ 1871493 (-) | True | cops8 |
| XM_034304738.1 | mRNA | upstream | 11929 | 1862153 ~ 1863790 (-) | True | trim63b |
| XM_026947295.2 | mRNA | upstream | 99908 | 1950132 ~ 1986039 (-) | True | ranbp2 |
| XM_026947297.2 | mRNA | upstream | 99908 | 1950132 ~ 1985889 (-) | False | ranbp2 |
| XM_026947296.2 | mRNA | upstream | 99908 | 1950132 ~ 1985889 (-) | False | ranbp2 |
| TU90050 | other | downstream | 45592 | 1797982 ~ 1803645 (-) | True | G75893 |
| trnar-ucu_7 | other | downstream | 174664 | 1674484 ~ 1674573 (-) | True | trnar-ucu_7 |
| trnat-agu_8 | other | downstream | 175052 | 1674112 ~ 1674185 (-) | True | trnat-agu_8 |
| trnar-ucu_6 | other | downstream | 186628 | 1662520 ~ 1662609 (-) | True | trnar-ucu_6 |
| trnat-agu_7 | other | downstream | 199111 | 1650053 ~ 1650126 (-) | True | trnat-agu_7 |
| TU90190 | other | upstream | 198799 | 2049023 ~ 2049385 (-) | False | LOC113547075 |
| XR_004578243.1 | other | upstream | 952663 | 2802887 ~ 2805863 (-) | False | LOC113541352 |
| XR_004578242.1 | other | upstream | 954324 | 2804548 ~ 2805863 (-) | False | LOC113541352 |
| trnas-cga | other | upstream | 1089097 | 2939321 ~ 2939402 (-) | True | trnas-cga |
| TU90967 | other | upstream | 1963255 | 3813479 ~ 3816036 (-) | False | faima |
