RNA id: TU90277


Basic Information

Item Value
RNA id TU90277
length 1204
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G76057
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2271867 ~ 2274639 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGACACAGGAAGGTAAATCCATTAACAAAAGGTATAAGAACTATAATTATGGTTACGCTGTGTTGCATTGGTGATGATTTTTCACTCATTAATATAACAACAGTGACAGAAACAGTGACAGTAAGGATTGTTTTTATAAGCTTTATTACAAAACTTAGGTTTTGTACACTACAGACCAAGTGCACTTGAAATCAGTGAGACAGAAGAAATCAGTGAAGAAAATGTGTCCATGACACAAGAACGCATGTTCATTATATGAACAAAACTTTCCTAAAGAGCACCACACCCTCCAGTAACCTGCATTCAGAACAGACACCAAACAGAAGCACACAGCACAATGACATGTTTCTGTATCttaacattatatttacaatacaaGAACCTTggacatgaataaaaataaatatataccaaatgtaaatgtaactttaacGACTGTAATATAACGTTCAATGACTCTGCGTAGCAAGCTGTCTAAACTAGATCGCCTGTGTTTCCAAGCAGAGCAAATTTCCGGGCTAAAACAGCAACCAAACTGTTTACTTCCGGGATTTGCTACTCTGTTGGTAATTCACtggctaagaaaaaaaaaaaaaaaaaaaagaatttcactgcatGCTATGCAATGTGAACCCTACATGACTTTCAAATACTTTGAATAATTGTACTGCACACACTAGACGACATATTACTTGCAGTCTCGTGTAGTGGTGTATACTATAGATGCGGCATCTATGCAGTGCCTGGGCTGCCTAAGTATGTGCTTAGGCCTGAATCATACTGCTATTAGCACATATCTGCAAGCACGTCAGAGCATCATGCACAGATGCCCACACAGGTGGCAGTCTTAATACTTGCACGCAACATGAGCATGTACACTAGGGGCAGTGTTGCAAACTGAGCCAGAATTTACAAATAAgggacataaaaaaaaacagcaaaaacataTTGGACTTCTATGTTTCACTGtagtaataaaaagaaaacagacattactttgttttgaaatgtgCTGGGGGGGGGGAAAGAAAACTTGCATGAACAATTATAAAGTCAATTCTCACCAAAAGCATTTCTGTAACCTTGCCACTTGTCTGTATTAGATAGCATTAAACCAGTAATGTATTGAAGCACATTAATTTGACTAGTGTTTAAGTGCACAATTTTATCAATCATGGAAAGGCGatgctttagattttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90223 lncRNA downstream 157268 2114190 ~ 2114599 (-) True G76013
TU90126 lncRNA downstream 325691 1945973 ~ 1946176 (-) True G75947
TU90099 lncRNA downstream 346614 1913131 ~ 1925253 (-) True G75926
TU90097 lncRNA downstream 354429 1911196 ~ 1917438 (-) True G75925
TU90101 lncRNA downstream 357138 1914017 ~ 1914729 (-) True G75927
TU90288 lncRNA upstream 26082 2300721 ~ 2300940 (-) True G76060
TU90329 lncRNA upstream 175080 2449719 ~ 2450949 (-) True G76093
TU90634 lncRNA upstream 256015 2530654 ~ 2530992 (-) True G76333
TU90626 lncRNA upstream 281867 2556506 ~ 2559152 (-) True G76325
TU90615 lncRNA upstream 409877 2684516 ~ 2753806 (-) False ifngr2
XM_026936339.2 mRNA downstream 25247 2234810 ~ 2246620 (-) False LOC113540088
XM_026936346.2 mRNA downstream 25252 2234810 ~ 2246615 (-) False LOC113540088
XM_034304219.1 mRNA downstream 25258 2234810 ~ 2246609 (-) False LOC113540088
XM_034304213.1 mRNA downstream 25258 2234810 ~ 2246609 (-) False LOC113540088
XM_034304212.1 mRNA downstream 25258 2234810 ~ 2246609 (-) False LOC113540088
XM_026936246.2 mRNA upstream 206955 2481594 ~ 2522383 (-) False LOC113540058
XM_034304201.1 mRNA upstream 208391 2483030 ~ 2522385 (-) True LOC113540058
XM_034304837.1 mRNA upstream 392217 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA upstream 392217 2666856 ~ 2678131 (-) False il1rl1
XM_026945240.2 mRNA upstream 409869 2684508 ~ 2698756 (-) True ifngr2
TU90190 other downstream 222482 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 468222 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 597294 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 597682 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 609258 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 528248 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 529909 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 664682 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1538840 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2565321 4839960 ~ 4844879 (-) True G77283

Expression Profile