RNA id: TU90615


Basic Information

Item Value
RNA id TU90615
length 1749
lncRNA type read_through
GC content 0.36
exon number 2
gene id ifngr2
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2684508 ~ 2753806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttacagcatttagcagacgcccttatccagagcgactttcAGAAGAGCTTTATCGCTATCAAAAACACGTCCTCATGcgagttcactagGTCAGGGACTAAAAGTAGCATCGAGAACATTTCTTGAAAccagttgttttatattatcggaattaattaaagaaagtgTGAATAAAGAAAGTGTGAATAAAGAAAGTGTGCCAACACAAACtcataaattcagaaaaataaaactattcttataacaaaagaaatggtgccGTATGAGCGAAGTACGGGTCGTTCTGTCTGCGCGGAGCAGTAAGCTGTAAACAACTGCCTGAGCTGATGGGGATTtagcactttattattattattattattattattattattaattaaacattttcaaactaacttccacttctgcctttcagcTTTTACCCGGATCGTTCttttcgtgctcccagctgtctgtgcacttgaacttttatggaCTTTTAtgggcgtcactacatgcaTATGAGCTGTGTCAGAAATTCGCTTTGCACTTTATAGGTGATCAGCAAACGCAcacaagtacaaagaaaatcaatgtTTCTCAAACGTttgtaaatccagtggaaaattttagtttggtttggcttatgcaaacatttacacacacagttactaaaagcttgataaatgaggcccagtgacACAAAGCATTATAAAGGTGATATGCTGCACCTGGTCATTACTTTTTGTGAATTCTTTAGCTGTACCACTGTAGCATAATGTTACTGAAGTTCTGTTACAAAAATCATCCCACCACGTTTGTAATAATACCCTACGCAGCACTTTGTTCAAGACTTTTTGTGTTCTGATGATTCAGATTGCATAAAATAACAGCCACAGTAAAACTTACCGTTGGACAGAATACTATTAAAAGGattgtactgtctgttctgatCTTCATCTCATGAGACTCTGAAAGAGATTTCTTGTAGAATGGGTCACGGCCCCTCCTGAACCTGAGAAGCTGCTGCACAGTTTCTTGCATTTTGGCAAAGGTTGTGTTCTTATGATGAAATCACAGCCACTAAAATCCTCACTGCTGAATTGTCTCCCAtagtataaatgtttataaccAGTCCAGCCTTCCTAACTCCTGGTAAACATACTAAACATTACTATGTTCTTGCGTAGTTGTTTGTTAGCAAGAAAGCCTTAAAgcgttttgttgttttgaacaTAGATGCAgtttgcctttgttttttttgttgttgttttacctTCTGTTCTACCTTCTGTCTGCTACTTAGCAATGGGTGTACTGTTCACAGGTCATGTTGACATTGGGATGAGACagaaattaatatttgaaatgacGAACTGTAAATACATCTGTTTTaggggaacaaaaaaaaaaaaaagattttctcaTGCCTGGAGACACTCCTACCAGCAGATGTGTATAATCAGTTGTGAGTGCAAATAAGACATGGAGTAAATTGACGCAGAGTTAATTTCTTCCTTCACTCAcaaatttgtttgattttttgcaaaaaaaaaaaaaaaaaaaaagtatatgtgTGCTAATAATCTTTAGTTTTCTCAATCATAATGACATTAATTATATCCACACATTTCACTATTATGAGTAAATGTTGGGACCCTCTTTTGATCCTGAGGTTTCAAACCTGAGAACAGTTTATTACTGATGAACTTGGTTGTATTTCTCCATTATGTATTGATTTTTTCTGcggtaaataataaaaatgtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90626 lncRNA downstream 125364 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 153524 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 233567 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 383576 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 409877 2271867 ~ 2274639 (-) True G76057
XR_004578280.1 lncRNA upstream 139570 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 160594 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 182275 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 211460 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 211589 2965395 ~ 2966533 (-) False G76462
XM_034304837.1 mRNA downstream 3616 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA downstream 6385 2666856 ~ 2678131 (-) False il1rl1
XM_034304201.1 mRNA downstream 162131 2483030 ~ 2522385 (-) True LOC113540058
XM_026936246.2 mRNA downstream 162133 2481594 ~ 2522383 (-) False LOC113540058
XM_034304215.1 mRNA downstream 437937 2234810 ~ 2246579 (-) False LOC113540088
XM_026937180.2 mRNA upstream 6444 2760250 ~ 2772389 (-) True LOC113540598
XM_026938205.2 mRNA upstream 22034 2775840 ~ 2799002 (-) True crfb1
XM_026938224.2 mRNA upstream 22034 2775840 ~ 2799001 (-) False crfb1
XM_026938233.2 mRNA upstream 22034 2775840 ~ 2790715 (-) False crfb1
XM_026938295.2 mRNA upstream 47200 2801006 ~ 2805856 (-) False LOC113541352
TU90190 other downstream 635131 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 880871 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1009943 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 1010331 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 1021907 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 49081 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 50742 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 185515 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1059673 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2086154 4839960 ~ 4844879 (-) True G77283

Expression Profile