RNA id: TU90626


Basic Information

Item Value
RNA id TU90626
length 1335
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G76325
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2556506 ~ 2559152 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacattgaaccttgaggtggatgggctacaacagcagaagaccatgatGGGTTCCActtctttcagccaagaacagaaagaagaGGCTGCATTGGGCACAGGTCCACTAATACTGGACAGTTTAAGACTGGagaaacgtagcctggtctgaagaatttcaatttctgctgaggctcacagatggtagggtcagaatttagcACCAACAGCacgaatccatggacccaacctgccttatGTCAACaatccaggctggtggaggtggtgtaacgCTGTGGGGAATgctttcttggcacactttgagCCTATTAacaccaatcaatcattgcttgaatgccacagaccATTTGATTAtcgttgctgaccatgtgcatcactTCATGGctacaatttaccatcttctaatggttacttccagcatgataatgcaccatgtcacaaagcagaagtcatctcaaactggttttctttcagtgttcttcagtggccttcccagtcaccaaaCACCTTAGGGAcatggtagaacaggagattcgcagcatgaaagtgcagctgaaaaatctgcaggaactgtgtgatgcaatcatgtcaacacggaccagaatctcaaagcaatgtttccaacatcttgtggaatccacgCCATCCatgctgttttgagagcaaagggaggccctagcCAGTAtaatatagtgttcctaataaagtgctcagtgagtataaatgtatatttcaatAAACATAACAATTGCTCCTGAGCGGTTATGCCGTGCCCCATGTGCATCTTTGTAAAATAAGCTTGAACTGCAAACCCAAAGAGCCTGGTTTGAGTCCTCTGTAGTTAAGAACAGTGCTCTATCTCCTCCTCAAACAGTTAACCAGGTATTCAAATACACCATGTATACCTCTAATCTGTAAAGGGCTGTACTGTCTCCATACTGACCTGATATAGATATGTGTAACCTCAAATTAAAGCAGATAGCCTGCTTTTTACTTTACTGTcatggttttatttcaaatgcagCATCCAGGACAATCCCAAAAGCTGTCAGTACATAGTTtgtaaatgaatgagtgaataaatgagcACAGTGCACTACCCTgaggatttctctggagatgtaTGCAATCCAGTCTTCCTTCAGCCAGTTTCCTTTAGTGTTCTTCACCAGGTCTGTGATGGAGCCAGCACCACAGAactccatcaccacCCAGAGCTGGTCATCGTGTCCTGGTGGGCTCTTTTTGATGAAAGCTCCATAGTAGGTGGCGATGTTGCGATGGTGAGAATATTTCTTCAGCATATTAATCTCCAACTTgatttcttcctcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90634 lncRNA downstream 25514 2530654 ~ 2530992 (-) True G76333
TU90329 lncRNA downstream 105557 2449719 ~ 2450949 (-) True G76093
TU90288 lncRNA downstream 255566 2300721 ~ 2300940 (-) True G76060
TU90277 lncRNA downstream 281867 2271867 ~ 2274639 (-) True G76057
TU90223 lncRNA downstream 441907 2114190 ~ 2114599 (-) True G76013
TU90615 lncRNA upstream 125364 2684516 ~ 2753806 (-) False ifngr2
XR_004578280.1 lncRNA upstream 334224 2893376 ~ 2897204 (-) True LOC117597440
TU90707 lncRNA upstream 355248 2914400 ~ 2917047 (-) True G76400
TU90778 lncRNA upstream 376929 2936081 ~ 2936563 (-) True G76455
TU90786 lncRNA upstream 406114 2965266 ~ 2966533 (-) True G76462
XM_034304201.1 mRNA downstream 34121 2483030 ~ 2522385 (-) True LOC113540058
XM_026936246.2 mRNA downstream 34123 2481594 ~ 2522383 (-) False LOC113540058
XM_034304215.1 mRNA downstream 309927 2234810 ~ 2246579 (-) False LOC113540088
XM_034304837.1 mRNA upstream 107704 2666856 ~ 2680900 (-) True il1rl1
XM_034304836.1 mRNA upstream 107704 2666856 ~ 2678131 (-) False il1rl1
XM_026945240.2 mRNA upstream 125356 2684508 ~ 2698756 (-) True ifngr2
XM_026945215.2 mRNA upstream 145208 2704360 ~ 2712278 (-) True LOC113545737
XM_026945224.2 mRNA upstream 147177 2706329 ~ 2712278 (-) False LOC113545737
TU90190 other downstream 507121 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 752861 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 881933 1674484 ~ 1674573 (-) True trnar-ucu_7
trnat-agu_8 other downstream 882321 1674112 ~ 1674185 (-) True trnat-agu_8
trnar-ucu_6 other downstream 893897 1662520 ~ 1662609 (-) True trnar-ucu_6
XR_004578243.1 other upstream 243735 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other upstream 245396 2804548 ~ 2805863 (-) False LOC113541352
trnas-cga other upstream 380169 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 1254327 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 2280808 4839960 ~ 4844879 (-) True G77283

Expression Profile