RNA id: TU90778


Basic Information

Item Value
RNA id TU90778
length 483
lncRNA type intronic
GC content 0.46
exon number 1
gene id G76455
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2936081 ~ 2936563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCATTctgccagtgtgtgtagtgtgtagtgtagttgtgtagttgtgccATGGCCCATAGTGTTcattctgtcagtgtgtgtagtgtgtagtgtagttgtgtagttgtgccATGGCCCATGGTGTTcattctgtcagtgtgtgtagtgtgtagttgtgtagttgtgccATGGCCCATAGTGTTCATTctgccagtgtgtgtagtgtgtagttgtgtagttgtgccATGGCCCATAGTGTTCATTctgccagtgtgtgtagtgtgtagtgtagttgtgtagttgtgccATGGCCCATAGTGTTCATTctgccagtgtgtgtagtgtgtagttgtgtagttgtgccATGGCCCATAGTGTTCATTctgccagtgtgtgtagtgtgtagttgtgtagttgtgccATGGCCCATAGTGTTcattctgtcagtgtgtgtagtgtgtagtgtagttgtgtagttgtgccATGACCCATAGTGTTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90707 lncRNA downstream 19034 2914400 ~ 2917047 (-) True G76400
XR_004578280.1 lncRNA downstream 38877 2893376 ~ 2897204 (-) True LOC117597440
TU90615 lncRNA downstream 182275 2684516 ~ 2753806 (-) False ifngr2
TU90626 lncRNA downstream 376929 2556506 ~ 2559152 (-) True G76325
TU90634 lncRNA downstream 405089 2530654 ~ 2530992 (-) True G76333
TU90786 lncRNA upstream 28703 2965266 ~ 2966533 (-) True G76462
TU90785 lncRNA upstream 28832 2965395 ~ 2966533 (-) False G76462
TU90910 lncRNA upstream 656255 3592818 ~ 3595411 (-) True G76570
TU90968 lncRNA upstream 850393 3786956 ~ 3805597 (-) False faima
TU90966 lncRNA upstream 872629 3809192 ~ 3816036 (-) True faima
XM_026937158.2 mRNA downstream 16074 2919306 ~ 2920007 (-) True c5h2orf69
XM_034304223.1 mRNA downstream 106260 2823816 ~ 2829821 (-) False tyw5
XM_026942700.2 mRNA downstream 106516 2823816 ~ 2829565 (-) True tyw5
XM_026938295.2 mRNA downstream 130225 2801006 ~ 2805856 (-) False LOC113541352
XM_026938287.2 mRNA downstream 130226 2801006 ~ 2805855 (-) True LOC113541352
XM_026932051.2 mRNA upstream 7711 2944274 ~ 2960366 (-) True cavin2a
XM_034304728.1 mRNA upstream 32117 2968680 ~ 3060237 (-) True tmeff2a
XM_034304802.1 mRNA upstream 697429 3633992 ~ 3745380 (-) True dnah7
XM_034304801.1 mRNA upstream 698026 3634589 ~ 3745382 (-) False dnah7
XM_034304799.1 mRNA upstream 698026 3634589 ~ 3745356 (-) False dnah7
XR_004578243.1 other downstream 130218 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 130218 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 886696 2049023 ~ 2049385 (-) False LOC113547075
TU90050 other downstream 1132436 1797982 ~ 1803645 (-) True G75893
trnar-ucu_7 other downstream 1261508 1674484 ~ 1674573 (-) True trnar-ucu_7
trnas-cga other upstream 2758 2939321 ~ 2939402 (-) True trnas-cga
TU90967 other upstream 876916 3813479 ~ 3816036 (-) False faima
TU91765 other upstream 1903397 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 2395021 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 3386590 6323153 ~ 6324680 (-) False LOC117597343

Expression Profile