RNA id: XM_034304864.1


Basic Information

Item Value
RNA id XM_034304864.1
length 4184
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC113526229
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10595440 ~ 10614287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgcAGCTTGGAAAGCGGGAAAAGGAAGGACTTTGAAAGCGAAggactttgatttttttttttttgcctgagaGTAGAACAGTCTGGAGAGTTAGGGAGTTAAACTGCACAACTGCTGCGTCAGTGTCACCATGTGAGAACGGAAGCTGTTTCTGCTGCCTGCATTTTTTTCGCCATTGAGGAAACCATGGCATTTGAGTAAGTGAATGTGCCAGCAACTCATTTTCCTGAGACGAAATGTAAGTGACTCTGTTTCTTGTGTCACACTAAGCTTGGAATACTAAATAACAAGGCTGGGTTATCATTCTGTGAAAGTGCACCAATGGTTTTGGGCTCCAACGGTAATGTATTATTTGGTTCAGTAAAGTGGGACTGAGACTTGAGCGGGTTACTAACTTAATGGAGACTCAGAGTTTAACTTGTACAAATGTTGACTGCTGATCATATTGTTTTCAGGTGTTTAACATGTTTTGGGAacaagttgtttattttcatttaggtACTTTGCTTACATAATTGGCTAAGTCTATAAGGGTTTTCCTTTATTTAGCgtaacattcatttattaattaatcttttcattattttgggGAGGGATTGTATTATAAAATGGTGGTGCCTagtgtttaaataaattctaatttgtttgtttctacGTCTGTGTCGCTGTAATTTtgattgtgagtgtgatttACTGTCTTTGAATTTAGGCATTTAAACATTCTATCCCTATAAGGTAAAGCAAGGTAGGGTTACACTTCATTGTCCTTTTTTGAGCTTGTTGGCATGAGTTACAGTACACTTTCACTGTACGGAAAATGATAGCTTGTTGGTCTTTCAAAAAATTGTGTTGCATGGAACAAAGAAAAGCATAGGGATCTTGAACAACATCACATTGATTAAAtgtcataatattttatttttacatgaattTTTACATATGGCAGCCATAATCAAAATCTTGATTAAATCATGAGGTGGTATACTGAGTAACTTTACTTCACATGCAGTATAAAATGTACGAATTGGGACCTGCTTGATTAACATTTGGAACGTTGTGCCATACAATCTGTTTTCTGAAGATGATATTCATGATGTGTTTACGTTCAACAGTTCTCCGCTCGTTCTTAGAATTACAGCATTGATGTCAAGTGTGATTGTGTCCTCtgaggtctgtgtgtgtacctgagcaAAGATCCAGACAATCTGGACACAGAGAACTGCCAGAAGGAGATATCAGAGGCAGTCACTGGAATGTtcttactgaaacactgaaggCACAACCACTCAAATCCAAGCTATTTTGTGAGTGAAGCCATTGAAGACATGCTTTTAAAACACTGAGGCACTTTTTTGGAAAGACTCTTTTGTTCTCACATGTGTTCAAGTGAGTCATGTGGATTTATACTGCTCATTAGCAACATCACATCTCTGGGGAGCAGCATCCACTCAGCCTTTAAACCTCCTGAAATCTTGTGGCCACTGGAGGTAAACCACACTTACTGTGCACACTTTGGCCAGGAGCCCACAGCAGAAGAGGCCAAAGAAGAGAGAGATCTGCTCAATTCCATTGCATGGCCAGGTCCCTTGGTGCAAGACCTGCCTGTGGAGTTCAGCAGCGACCCTGCCAAGAGCTACTTTGTGATTCAGGGCCCAGCAGAGCAATACATAGGTGGTCAGCTTGTGGTTCATGTCCACGTGCAAAACTTCTTGGGCCTACCTAAGGATCATGGTGGAGATTTCCTGATAGCTCGGCTGCATTCTCCCGAGCTGGGTGCCGGTGTTGCAGGGAAGGTGCATGACCATCATAATGGCAACTATACAGTGTTGTTCCCACTGCTGTGGACTGGTGAAGCATGGGTGGAAATCACCATGGTGCACCCAAGTGAGGCAGTGGTGGTGCTTAAGAGGTTGCAGGAGGAGCATCCCGACAGAGGGTTTTTTAAGAGTCTGTTCCGCTCTGGTGCTCTCTCAGAGACCACCGTGTGCAACCTGTGTCTGCCGCTCAACGAGAAACCACTCTGCAACTACACTGACCCTTTAACTGGAGAGCCCTGGTACTGCTACAAGCCTGAAATGCTAGGCTGTGACACACGAGTTACACATTGTAAAGGGGGCATAAAGCCAAACCTCATAACAAAATATGAAGAACAGTTCTTCCAGAGTGGTGTAAATCTCAAAGTTCCTATACATGCAACAGGGATGGGCAGTGTGACTGTATTACCTGCAGAAGAAGGACAAACCcaagtgaaaaataattacaCTGCTGCTGGATATTACTATAACAATTCCTGGAGACCTTTGAACGCCATGGATATGCACGAGTTTAATGACTCATCAGTCATAACACATTGTCTTAGAGGGAAGCTTCTATACATGTTTGGAGATTCAACTATACGGCAGTGGTTTGAGTACCTCACTGCTTTTGTTCCTAACCTGAAAAAGATAAATCTCTACAGTCGTACGATATCAGGGCAATTCGTGGCTGTGGACAGCAAGAACAACATTATGGTCAGCTACCGCTGCCATGGGCCACCCATCCATTTTCCTACAGTGTTCTCTTCTGAGCTGCGCTATGTATCAAATGAGCTGGACAGGATTGAGGGTGGGCCAAACACTGTGGTTCTTGTGAGTGTGGGGTCACACTTTAACACCTTCCCTGTTGAGGTATATATACGGCGCCTCTGGCACATCCGCAGGGCCGTGGTGCGGCTACTGAACCGTGAGCCAGCTACTTTAGTGGTGGTCCGCACTGTCAACATGAGGAAACTGAACTTACAGATCAGCCTGTCAAACAGTGACTGGTTCTCTCTGCAGCAGGATGCTGTACTGCGTGCTATGTTCCAAGGACTTAACATACAAATGCTGGATGCCTGGGAGATGACGCTGGCCCACCACTTACCCCATGACCTACATCCACCCCTCCCCATCATCAAAAATATGATCGATCTGATCCTCTCCCGTATCTGCCGGGTTGGAAAAACATAGAAGTGTTTAAAAAGCTTGTGCAACAGACGCTTCATTGTATATAATTTCCACAGCAATATATGAACATTTCATCCACTTTTGAAGTGATTGGCTAAGGAGAATAATCAGTCCCATCAAATCAAATCACGCATAGAAAACTTGCATTAGACCTCACGATACCTGGCACCAACTTCTTttaaggaggaggaggagggaggaagtgCGGTGGATGCTTCAACAAGCAACAGTGCCAGTACAACACCTGAACGTCCATGGCCGCATGTTGGGTCCTGGAAGTGACGTCAATTTTGGTGCGCTGGGTGCACATTCTGGAGCGTGGCTGAGGAGAACTACGGATGCATTGAGTGAAGGCTGATCTCTGCGAGGGTTTAATTTGCACGCCGCCGAGCACGTTGGGCGGGGTGCGTTGTCAGTCGCAGTAGCGATACGGGGGCTGGAAGGTGTTGCAGCAGGCTTTTTGGTGGGGCGCTGCTAGATTCGGTGCGACGCTGTTCATCTGTATGAGCTGCAACTACGAGCATGGGTTATTCACCAGCTGTTTAGGAGCACCGGCACAGATTGgattgcttccttttttttaatgagttgtACTCTTCGACCAACCTTCTGCCTTTTACTAGAACCATGCATGGGTTGTGGATGCGTTCGGGGCTAATTGGATGACCATTTCATTTCAGCATCCGGTGAATGTGGGACTTGAGGAGGGGTACCGGAGGCGAATAGCGACGTGTTTGTCAGTACtatttggttgtgtttttgtgtgtatgtggttgtgtattttgaatttttctttcttttgtttatttttgtgagcAGTTTGACTTGCTCTTTTCCTCCAGCAGCCCAAGCTAAATGTTTCTTTATTGGGGTTATTATTTAAGTGTATGTTTGGTTGTgtcttatattttgttttctttttttccttcagaatTGGGGGGCTAGCATTAGCCAGAGTCctctgtgtgtggtggtggtgcgGCTGTTGGCTTGCAGTGTTCACAACGGGTGATTTGGTGCTGTGGTGGCACGCGTGGTTGCTGTGTTTATTGGATAGGCAAGACGATTTCCCCAGTTCTGAAGTGGTgaagtgtgcgtgtgtataaTGTTATGAGTGagatgttttaatgtttgtatATTAAAGAGATCAATGCTGCAGTTTATTGTATGCTGTTCTGAATAAATTGTGTGAACCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94834 lncRNA downstream 818051 9775806 ~ 9777389 (-) True G79903
TU94864 lncRNA downstream 822163 9772634 ~ 9773277 (-) True G79933
XR_003402716.2 lncRNA downstream 828864 9764485 ~ 9766576 (-) True LOC113525888
TU94854 lncRNA downstream 837271 9757930 ~ 9758169 (-) True G79923
TU94851 lncRNA downstream 839475 9755741 ~ 9755965 (-) True G79920
XR_004578184.1 lncRNA upstream 7250 10621537 ~ 10622344 (-) True LOC117597353
XR_003402728.2 lncRNA upstream 104847 10719134 ~ 10721674 (-) True LOC113526087
TU95462 lncRNA upstream 158101 10772388 ~ 10775221 (-) True G80463
TU95463 lncRNA upstream 161755 10776042 ~ 10776341 (-) True G80464
TU95531 lncRNA upstream 294886 10909173 ~ 10931379 (-) True G80526
XM_026912017.2 mRNA downstream 56569 10517207 ~ 10538871 (-) False pou2f1b
XM_026912088.2 mRNA downstream 56634 10517207 ~ 10538806 (-) False pou2f1b
XM_026912080.2 mRNA downstream 56634 10517207 ~ 10538806 (-) False pou2f1b
XM_026912040.2 mRNA downstream 56634 10517207 ~ 10538806 (-) False pou2f1b
XM_026912072.2 mRNA downstream 56634 10517207 ~ 10538806 (-) False pou2f1b
XM_034304399.1 mRNA upstream 21078 10635365 ~ 10646195 (-) False LOC113523755
XM_026909799.2 mRNA upstream 21078 10635365 ~ 10645755 (-) False LOC113523755
XM_026909792.2 mRNA upstream 21078 10635365 ~ 10645755 (-) True LOC113523755
XM_026909813.2 mRNA upstream 21078 10635365 ~ 10645465 (-) False LOC113523755
XM_026909807.2 mRNA upstream 21078 10635365 ~ 10645450 (-) False LOC113523755
TU94731 other downstream 940985 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 1026320 9568555 ~ 9569120 (-) True G79826
TU94713 other downstream 1063772 9528304 ~ 9531668 (-) False LOC113525856
TU95628 other upstream 355130 10969417 ~ 10971157 (-) True G80600
TU95687 other upstream 403992 11018279 ~ 11035561 (-) True G80656
TU96948 other upstream 2098912 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 2098912 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 3938164 14552451 ~ 14553459 (-) False med14

Expression Profile