Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578180.1 |
| length | 1137 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 3 |
| gene id | LOC117597344 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047599.1 |
| NCBI id | CM018545.1 |
| chromosome length | 32114633 |
| location | 11844876 ~ 11857267 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU96223 | lncRNA | downstream | 83399 | 11760490 ~ 11763719 (-) | False | LOC113526311 |
| XR_003402757.2 | lncRNA | downstream | 83424 | 11760451 ~ 11763694 (-) | True | LOC113526311 |
| TU96157 | lncRNA | downstream | 157150 | 11688535 ~ 11689968 (-) | True | G81014 |
| TU96155 | lncRNA | downstream | 159876 | 11686981 ~ 11687242 (-) | True | G81012 |
| TU96130 | lncRNA | downstream | 201132 | 11645391 ~ 11645986 (-) | True | G80995 |
| TU96413 | lncRNA | upstream | 184520 | 12041634 ~ 12045475 (-) | True | G81220 |
| TU96414 | lncRNA | upstream | 193253 | 12050367 ~ 12050654 (-) | True | G81221 |
| TU96415 | lncRNA | upstream | 194304 | 12051418 ~ 12051772 (-) | True | G81222 |
| TU96436 | lncRNA | upstream | 257993 | 12115107 ~ 12115359 (-) | True | G81243 |
| XR_003404757.2 | lncRNA | upstream | 350895 | 12208009 ~ 12210224 (-) | True | LOC113546902 |
| XM_026912749.2 | mRNA | downstream | 90256 | 11748026 ~ 11756862 (-) | True | mfsd9 |
| XM_026911292.2 | mRNA | downstream | 109374 | 11710608 ~ 11737744 (-) | True | LOC113524909 |
| XM_026913038.2 | mRNA | downstream | 146085 | 11698385 ~ 11701033 (-) | True | LOC113526203 |
| XM_026912502.2 | mRNA | downstream | 149382 | 11692720 ~ 11697736 (-) | False | si:dkey-4e7.3 |
| XM_026912621.2 | mRNA | upstream | 30754 | 11887868 ~ 11895080 (-) | True | fhl2a |
| XM_026912597.2 | mRNA | upstream | 109380 | 11966494 ~ 11995666 (-) | False | uxs1 |
| XM_034304859.1 | mRNA | upstream | 109380 | 11966494 ~ 11995666 (-) | False | uxs1 |
| XM_034304858.1 | mRNA | upstream | 109380 | 11966494 ~ 11995666 (-) | True | uxs1 |
| XM_026912464.2 | mRNA | upstream | 158331 | 12015445 ~ 12049701 (-) | True | st6gal2a |
| TU95687 | other | downstream | 811557 | 11018279 ~ 11035561 (-) | True | G80656 |
| TU95628 | other | downstream | 875961 | 10969417 ~ 10971157 (-) | True | G80600 |
| TU95376 | other | downstream | 1238076 | 10608313 ~ 10609042 (-) | False | LOC113526229 |
| TU94731 | other | downstream | 2192663 | 9653794 ~ 9654455 (-) | False | si:dkey-83m22.7 |
| TU94755 | other | downstream | 2277998 | 9568555 ~ 9569120 (-) | True | G79826 |
| TU96948 | other | upstream | 856085 | 12713199 ~ 12728025 (-) | False | hspbap1 |
| TU96950 | other | upstream | 856085 | 12713199 ~ 12716669 (-) | False | hspbap1 |
| TU98093 | other | upstream | 2695337 | 14552451 ~ 14553459 (-) | False | med14 |
| TU98227 | other | upstream | 2970672 | 14827786 ~ 14837393 (-) | False | ndp |
| TU98290 | other | upstream | 3206311 | 15063425 ~ 15077195 (-) | False | dcaf6 |
