RNA id: TU96413


Basic Information

Item Value
RNA id TU96413
length 3794
lncRNA type intronic
GC content 0.39
exon number 2
gene id G81220
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12041634 ~ 12045475 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTAATGACTAAACAGGAGGTGTGTGCAGAGAAGAGGCAATTAATGAAAAGATTATTAAGGATTTTGGTTTTATACAAAATACTGTAATTGTTTTTGACTGTCATCGTGtctcaatggttaaggctctgggttactgatcagaaggttgagagtttaagccccagcactgccaagtgccactgttgggctcttgagcaaggccttacccctctctgctccagggttgctgtatcatggctgaccctgcactctgacccctaACTTCCTAACAAACtgagatatgtgaagaaaagaatttcactctcCTGTAaagtatatgtgacaaattaaaaaaaaaaaaaaaaaggcttcttcTATTTCATATTCTATTTCATATGAAATGTCATGCTGCTGCAGAAGCCAGTAATGTGAGAGTGTCTGCTGAAGGCCATTCCTGGTGTCCCTGTGTTTGTTGGATAAGTGTAGAACTCTCTTCTGTCATTGTAACTCAAAGATGGACACCTCACACAAGCCTATGCTGCTGCCTTCTgatatctttctctttttttttttttttttttttaaagaagaaactTTTTCTTTGTCTAATGGGCTGTGAGGCATTAGGAGAGTGTCTGGCATGCAGCACTGGGCACAGAAATTTGAGACGATGACTACAGAGCAGCCGCTATGAGCTGTGTACCACCAGGGTAAACTTATCCGTGCCTGCTGAAAGCCACGGTTCTCCAACTTCACACAGACTGAAAGCACTTCAATTAGAGGCACACAAAGGAAGGGTAATGGAGTCTTACTACAAACTTGTAAGCATTTGCCCTGGATGTAATGCCAAGACACACTACAGTTCACTTTCCTGCAAATGTTGATTACTGCTTGCGTCATCCAGCAGCAAGCTCTGTCATAACTTGTCTGATTCTGATTTCGTGTACATGAGAGCTGACTCTTCTGtggtttatgtttttaatgGCAGCTCTGTTcttaaattctttaaatttaccaagatatttatttagcattcattcatcttcagtgaccaCTTTACCGgtactggtcagggtcatggtggttctGAAGCCTGTCCCAGAACACAACAATAGGATGAAACAAATCCTGCTGACTGGACTCAGCCAGGGCTTTAAAAGGTTTATCACAGCCCATCATGTTGTATTCTGTTTGACAAAATCTGCTGCATGTTTCAATGTAAAGAACTATTCTCACTTTATCTGCAGATATTCTGCTGTAGATACCTTTGATGCAAAAGAAGAGCACAGGACTATGGTGAAATctgataaatgacatttttgtcagtatgaataaaaaaaaattcccttgCAACCTTAtgacttggggaaaaaaattataacgtGTCTTCGTACATGAACATGTGTTTGCTGTCTGTATCCTTGAGGATCCTAACACAGCAGAAATCTGATTACCCCTAATGCCCCAAATTCAGCCCATTAAGGCTTTGATAAGTAGCTGAGGAGGTAAGAGGCATTATAGATGAGGCAGAATGCTAAACTCTGCAGGGACTGGAGTCTTattacagtcatgggaaaaagaaagtacaccctccttcaattctgtatttttatttagcagggcctaaataacaattgtgtggtcctgaGTAATTTCTGTAAACAAATagataacctcaggtgacaacaacaacaacaaaaaaaacacaacagatatGTCaatatgtagtatgtagtaaaCCATCATTCAGAAAACAGATGGGAAAACAATAAGCACAccatataattcagtaacatgtagaaccacttTTGGCAATAAGTTGAAGtagatgttttctgtaggagtttcaGTCCctcacattgttttggagactttttggcccactcttctttacagcattgcttcagttcattgttACTTGAGGGCATTCGTTTATGCACACCTCTCTTCCCATCACAGCgtctcagtggggttgaggtctggactttccAACACCttccaagacttttttttttttcttctttagccattcagatgtcaatttgctggtgtgcttgggatcgtTGTGCTGTCTCATGACCCAATGTCGaccttaagctgctggacagatggcctcacatttgtcccAAGAATATTCTGGTGTAAAGggagttcatcattgtctcaatgactgcaagtttcccaggtccagCTTGACTGTTGGTGTGAGGTGTTTATAGCGATaggctgtgtttggttttcatcaaacatggcactgtgcatgatgaGCAAACATCACCACCTTGGTCTTATCATTCCATGCATATTGTTCCAgaatttttgtggttttttagATACAATTCTGCAAATCTACATCATGCTGCCTTATTCtttttttggagagaaggactttttcctagccaccattccatgaaagccatacttgttctgtctttttttctgactgtgatctcatgaacataaacatttaatgtgcttacagagacctgtaggtcacatgatgtgggtcttttggttttatatataactcTGAGCGTTAAAAGGTCTGACCTTGAGCCTAATTTGATGGGAggcccactcctgggaagattggcaactgtcttgaaggctctccattagTAAACTATTCTTCTTACTGTATAATGgtaaatttcaaattgtttggagatggccttataacccttcccagattgatgagcagcaacagttgcttctctgtggtcatggctgatgtcctttcttcttggcatgatgtggACACACCCCTGAGTACttcagaacaccaaactgccaacaTTTCTGCTTATATAGAGGTAGTCGCTCTTCTTGATGGTTTTAGAAATaactggctgctaattactctcttaataattgtggaagtaggacgtgtgtacttatttttccccacttggtttctgaatgttggtttactttctggggaaaaatgactatatattgaaatctgttgtttttttgttgtcacctgaagttatttgtttgtttttagaagttggtgaggaccacacaattgttatttatcccctgataaataaataacatagaATTGTAGGGAGATGTCATTTCTTTTCCCCATGATtgtaaataaatcactttaGCCAACTGGCCCCAtgatgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggacacatTTGGAACATAGAAAGAGACTGATTGTCTTTTTATGTGGTCATTCGCACAATGGGTACAGTAATGGCAAGTACAGTGTACATAGACTATGGCTTTGTCTTTTGAATGCactaaatgtgttgttttgttgaGGCTCATACACTGGATTAACCACACAAAATTACccccaaggtgtgaatgtgtgcgcaAATACAAGTAAAACAAATACAAGCGTATTATTTGAGCTAAGGATACTAATACTCCTGGATATAAATGGCACAATAccaattttctcttttctgataCTAATACTGAAACCCTGAGTACCAGTTGATAACagtccaattatttttttaactactgAGTGTTACAAGATTGAATTCAAGCACTTCATTTACTTCATTCACTCAAACTGCTCAAACACACGACAGGAAGAAATTCATAACTATCACGATGTATGCAACACAGATTTCTTATTTCGTGTGAAGTATTTACACACAGTCCCCATGATAGCAACTCCCACACATGCTTAGTAGTCTAGTCTACTCAGTGTTATTCTGGTGACTAGGGTAGCGAATGTGATGCAAGTACAATTTTACTCAGAAGTTTACTCAGTTTTGCTCAGAAGTTTACTCAGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96345 lncRNA downstream 184367 11844876 ~ 11857267 (-) True LOC117597344
XR_004578180.1 lncRNA downstream 184520 11847118 ~ 11857114 (-) False LOC117597344
TU96223 lncRNA downstream 277915 11760490 ~ 11763719 (-) False LOC113526311
XR_003402757.2 lncRNA downstream 277940 11760451 ~ 11763694 (-) True LOC113526311
TU96157 lncRNA downstream 351666 11688535 ~ 11689968 (-) True G81014
TU96414 lncRNA upstream 4892 12050367 ~ 12050654 (-) True G81221
TU96415 lncRNA upstream 5943 12051418 ~ 12051772 (-) True G81222
TU96436 lncRNA upstream 69632 12115107 ~ 12115359 (-) True G81243
XR_003404757.2 lncRNA upstream 162534 12208009 ~ 12210224 (-) True LOC113546902
TU96617 lncRNA upstream 250872 12296347 ~ 12296635 (-) True G81413
XM_026912597.2 mRNA downstream 45968 11966494 ~ 11995666 (-) False uxs1
XM_034304859.1 mRNA downstream 45968 11966494 ~ 11995666 (-) False uxs1
XM_034304858.1 mRNA downstream 45968 11966494 ~ 11995666 (-) True uxs1
XM_026912621.2 mRNA downstream 146554 11887868 ~ 11895080 (-) True fhl2a
XM_026912749.2 mRNA downstream 284772 11748026 ~ 11756862 (-) True mfsd9
XM_026912569.2 mRNA upstream 39640 12085115 ~ 12088620 (-) True pdzk1
XM_026912570.2 mRNA upstream 40210 12085685 ~ 12090514 (-) False pdzk1
XM_026910761.2 mRNA upstream 437186 12482661 ~ 12496451 (-) True irs2b
XM_026910153.2 mRNA upstream 498304 12543779 ~ 12589550 (-) True col4a1
XM_026912674.2 mRNA upstream 611578 12657053 ~ 12661141 (-) True LOC113525968
TU95687 other downstream 1006073 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 1070477 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 1432592 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 2387179 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 2472514 9568555 ~ 9569120 (-) True G79826
TU96948 other upstream 667724 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 667724 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 2506976 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 2782311 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 3017950 15063425 ~ 15077195 (-) False dcaf6

Expression Profile