RNA id: TU96948


Basic Information

Item Value
RNA id TU96948
length 1583
RNA type TUCP
GC content 0.47
exon number 8
gene id hspbap1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12713065 ~ 12728037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTGGCCTTTACTGATACGACGACCTCCGTCCTGGCAGAGCCCGAATGGCTGGAGTTTCTCTTCCCGTccgattttttctttttttttaaaccgttGTTAGCTCTCACGTGAGTTTGTTTACAAGGCCAAATGAGAACAGAGAGTACTTTTGCGCTTTTCTGGGAGGCTGAGTGAACGTCCGCATGTCTAGCTGCTAGCTACATTTGACCTCTGCAGATATGGCCACTAAACCCTTCAGGCCAGAGGAAGCACGCAGGATCATGCAATTTCTGCACAGGCCAGCAGTTTTCCTCAACATGACTGATAACTGGCCAGGACGGGACTGGACTTTGGAACATCTGGCACTTTGTCTAGAGGAGAAAACTGTACGTTTTCGTATTGGGAAGCGGTGTGAACAGAAGGCTCCTCTCTTTGAGACAGAGTGCTCATATGTCGAAGCAACTCTTGCAGAGTTTCTCTGTTGGACGAGGGGAAGTGACGCTGCATCTGTAGGCCCATTTGCTGATTATCCCCTTTCAGAGTACTGGGCTTATGCAGACTACAAGTATATCGCCCTCCTTTTTCAGGACAAGACCACCATGTTTAAGGATGTATTGTGGTCTGACTTTGGCTATCCAGGCCGTGATGGGAGAGAGAGTACTCTATGGGTTGGTACAAATGGTGCTAACACTCCATGTCACCTGGACTCCTACGGATGCAATCTTGTCTTCCAAATTCAAGaAAACGCTGGCATCTCTTTCCTCCTGATGATACAGAATGTATGTACCCAACACGTATACCGTATGAGGAGTCGAGTGTGTTCAGCCAGGTCAACGTGATACGTCCTGACATGCACCGATTCCCTGCTTTCCGAAGAGCCAGGGCCCACCTCGTCACTCTGGAGCCGGGTCAGGTTCTTTTTGTCCCAAGACACTGGTGGCACTATGTGGAATCAGTAGATCCAGTAACTGTCAGTGTCAACTCTTGGATTGAGATGGAGGTGGATGATGAAGCCCGAATAGGAGAGGCTCTGACCAAAACCATCATCTGTGCATTAAAGACTAAACCAAGTGTGGATAACAAAGACAACTGGCTCAATCCTACTGAGGATGGGATCTCTACACATGATGAAAACATGCAGTACTTGAATCTAGCAGTGAAGGCTTACACGACTAAAAGGAGCTTACATTCTGAAGACTGGCTCACATGTGCAGAACAACCCAGTCCCTCTGCTTTGAAGCGGGACTCCAGTGGTCATTTGAAGACCCCTGTCACTGAGCCTGTGACCTCATTTTCATTGCCCTTTGGATCTCACCTCATTCCTGTTACTTGTCATGCAGACATGCCTCAGAAACCCACAATGACAAACCCCAAAGAGGCTCTCATTTCAAAAGACAATACActcttttacacacaaaaaagaacaaagccCCTGCATACAGATACACATGGGAAAGAAGAGGCAATCAGTGTatcagaggaggaagaagaagatggaAATGGTGGTGCAGTGTATGGGCGAATATCCACTAATGATGTGCTGGACTGCCTGCTACATCCTGATGTCATCGCCCTTGTTACAAAGCTAATgatagacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96858 lncRNA downstream 12706 12700250 ~ 12700493 (-) True G81634
TU96832 lncRNA downstream 57337 12654336 ~ 12655862 (-) True G81612
TU96773 lncRNA downstream 205511 12482679 ~ 12507688 (-) False irs2b
TU96731 lncRNA downstream 278627 12434367 ~ 12434572 (-) True G81520
TU96617 lncRNA downstream 416564 12296347 ~ 12296635 (-) True G81413
TU97040 lncRNA upstream 192891 12920916 ~ 12923093 (-) True G81802
TU97184 lncRNA upstream 368684 13096709 ~ 13099204 (-) True G81932
TU97263 lncRNA upstream 487345 13215370 ~ 13250509 (-) False gli2a
XR_004578245.1 lncRNA upstream 549875 13277900 ~ 13282536 (-) True LOC117597411
TU97281 lncRNA upstream 571433 13299458 ~ 13300403 (-) True G81995
XM_026912674.2 mRNA downstream 52058 12657053 ~ 12661141 (-) True LOC113525968
XM_026910153.2 mRNA downstream 123649 12543779 ~ 12589550 (-) True col4a1
XM_026910761.2 mRNA downstream 216748 12482661 ~ 12496451 (-) True irs2b
XM_026912570.2 mRNA downstream 622685 12085685 ~ 12090514 (-) False pdzk1
XM_026912569.2 mRNA downstream 624579 12085115 ~ 12088620 (-) True pdzk1
XM_026911676.2 mRNA upstream 48201 12776226 ~ 12873123 (-) False sema5ba
XM_026911691.2 mRNA upstream 48201 12776226 ~ 12873123 (-) True sema5ba
XM_026911685.2 mRNA upstream 48201 12776226 ~ 12873123 (-) False sema5ba
XM_026911707.2 mRNA upstream 56512 12784537 ~ 12873123 (-) False sema5ba
XM_026911699.2 mRNA upstream 56512 12784537 ~ 12873123 (-) False sema5ba
TU95687 other downstream 1677638 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 1742042 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 2104157 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 3058744 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 3144079 9568555 ~ 9569120 (-) True G79826
TU98093 other upstream 1824426 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 2099761 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 2335400 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 3491939 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 4300282 17028307 ~ 17039843 (-) False mettl8

Expression Profile