RNA id: TU97184


Basic Information

Item Value
RNA id TU97184
length 1527
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G81932
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13096709 ~ 13099204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATCCTGGAAAATCATAGTCGATGCCCTTTTCCGCCAGTCTCTTGCGAAGCTTTGATTCTTTGCTTAAAAGCTTTCCAGTAAGTTTCTTCATATCTTCTGGGCCGTGGTCTCTATTATAACGTGAGACTGCAGGCCGAATGGGCttcttaaacattttttgaGAACCAACAAAGAGCTTTTCATGGACTTTCTCAGGAGGCACCACCGACATTTGATCAGCCTTTCTCCCATGAGGTAGTTGTCCATGGTCTCTGCCACAATCTTAGCCACTTCATCACAGTCAAATTCCACAAAGCCATACCCTTTACTCCGGCCAGtctgcaaataaaacaaacatcagCTCACAATACAGCCCTTTAACAAGCACAAGAAGGCCACTAGATTCATTCTTCAGAACATTCATACATTTGATTGATGTAGGCACATGGGTTTCATTGCACAACTACAGAGCTGGCAATAAGCTTAATGAACCGCCTTTGTGTAGGCACAATTATCTCACCCACTGCAATACATGTGCTGAAGGTAATTTTCAGATTGTGCCATATAAGCTTCCCTATCATCACTGAACACCattttacacaatatacacatcTGAAAAACATGGAATTACCTTTTTACTTCTGGAGAGCCTCAAGCGCAGGATTTTGCCAAACTGAGAGAAGTAAGATCTGAGCTGTGGCTCGGCGAGTGACTGGGGAAGGTGGCCCACATACACCACACCTGGAGTTAAAGCCtggacaggaagaggaaagGAACAATGTAGTAGTTTTAAAATGGGGTTCATGAAGCCACGGGATGATGGacatcacaacccaccatttaTAGTAaagcttttacatttattactgagttcttaTCATTATAACTTTGTTTGACTGCTCACTTAGATTGGATGGGATTAATCATAACCGTcctcacaaaaaaaactaaaataataaattaaaaacagagaaatgcatcctgACCACCTCATGTGTAAAAATCTAATTAACACCGAAACCACTCGTACAGATGTTAGACAGATGGAGGGAATAACCAATCTTCAATATGGAAGCAATTCATTATAAAGCAGAGTATAgacatatacagttatacagacaTAAAGTGCTTGTTTCAAAAAAAAGAGCAGTGCTATTTAAACCCAACCCTTTAAATCCAAATAACTCGTGAGTTCACCTTCTATTCGTTCAATGACAGCTGAGAAAGCCCAAACTGCTAAGCAAATCGGTGGATTTAAACCAACTAAACACACTATACACCTCTTCACACACATGCTATCTAAGCTTTAGCTGATCCTCGTACCGCTTTCTGTCGCTTTTTCACTTGCTGCACTTTCTTCTGAAACTCAGCGTCTTCACTGGGATTGAGGGCGAGCAGCTTCCCGCTCTGCTTGTCCTCTGTCATAGCGAAAAGAAATTctgacaacaaacaaacaaaaaataatactaaaacacactaaagaAGATTCTCCACAACCGACATGCCACACGCTAAGCAACCACGTTTTTCGACAGAGGAAGCGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97040 lncRNA downstream 173616 12920916 ~ 12923093 (-) True G81802
TU96858 lncRNA downstream 396216 12700250 ~ 12700493 (-) True G81634
TU96832 lncRNA downstream 440847 12654336 ~ 12655862 (-) True G81612
TU96773 lncRNA downstream 589021 12482679 ~ 12507688 (-) False irs2b
TU96731 lncRNA downstream 662137 12434367 ~ 12434572 (-) True G81520
TU97263 lncRNA upstream 116166 13215370 ~ 13250509 (-) False gli2a
XR_004578245.1 lncRNA upstream 178696 13277900 ~ 13282536 (-) True LOC117597411
TU97281 lncRNA upstream 200254 13299458 ~ 13300403 (-) True G81995
TU97286 lncRNA upstream 202850 13302054 ~ 13302257 (-) True G82000
TU97298 lncRNA upstream 208323 13307527 ~ 13307726 (-) True G82012
XM_034304637.1 mRNA downstream 11411 13074696 ~ 13085298 (-) True LOC113526136
XM_034304639.1 mRNA downstream 11411 13074697 ~ 13085298 (-) False LOC113526136
XM_034304638.1 mRNA downstream 11411 13074697 ~ 13085298 (-) False LOC113526136
XM_026912946.2 mRNA downstream 11411 13074698 ~ 13085298 (-) False LOC113526136
XM_026912697.2 mRNA downstream 75157 13013525 ~ 13021552 (-) True hacd2
XM_034304676.1 mRNA upstream 92510 13191714 ~ 13250548 (-) False gli2a
XM_026912514.2 mRNA upstream 92510 13191714 ~ 13250548 (-) True gli2a
XM_026946245.2 mRNA upstream 214788 13313992 ~ 13321538 (-) True inhbb
XM_026946891.2 mRNA upstream 223426 13322630 ~ 13330891 (-) False si:dkey-3d4.3
XM_034304308.1 mRNA upstream 223426 13322630 ~ 13330811 (-) False si:dkey-3d4.3
TU96948 other downstream 368684 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 380040 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 2061148 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 2125552 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 2487667 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 1453247 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 1728582 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 1964221 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 3120760 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 3929103 17028307 ~ 17039843 (-) False mettl8

Expression Profile