RNA id: TU97359


Basic Information

Item Value
RNA id TU97359
length 954
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G82055
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 13354741 ~ 13355694 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attaatcttatttaatattattttcagcatttactaatgattattaaaatcaaacgtgtttgttaacattagttaatgcacAGTGAactaacatgagctaacaatgaacaactgtatttttattaactaacgTTAACAAAGAttcataaataatgtaataaatgttcattgtttgttcatgttagttaACACAATAACTAATGTTAATAAATGAcaccttattgtaaagtgttactaatatttttttatttgtgaactgatgttcagctgttctttttaataatcaaCTAATTTTCGGGTCATCGTCATAAaagctctgtaaacacaaacacagacacgaagatatagctttcatttcatcaagctgAATGCTCACTAAAAACTAACAGCCATCACGTTTTCAGGCcatttcaagttttcatttttgacgtGACACAAAGCAGTGATATCTAAGCGGGTGAgttgtttacttactttacaATTAGTCAGTAACGCCATCATTGTGTCCATTCAGGCGGAGAGCTCGCACGAAAACAAGAGGCGGGATTTATCGAAcgaacctatcacatccaatcataacctatcacatccaatcataacctatcacatccaatcataaccgatcacatccaatcataaccgatcacatccaattatAGCGCTATGGAGGCGTTGCCTACTGTCACGTGACTTTCCCCCATTCATTCTCAATTACCCCACACTAAACCCACAGCACGTTATGGCGTCTCTGTTATAAGTCACATTATATTGTACTGTTATAAGTGGGCTGAGGGGAGGCAAGCCTCCGCTGTAACTTTACCTGCGGGTGTCGCTGTTGGACAGTGTTACTTTATAAAAACGAgtgacttttatacttttaatgtcatttttagtaatatttgcgtcgttttatttttgcaatatcgTTTATTTTCTCATCTAGTTTTTTGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97338 lncRNA downstream 22238 13332290 ~ 13332503 (-) True G82035
TU97298 lncRNA downstream 47015 13307527 ~ 13307726 (-) True G82012
TU97286 lncRNA downstream 52484 13302054 ~ 13302257 (-) True G82000
TU97281 lncRNA downstream 54338 13299458 ~ 13300403 (-) True G81995
XR_004578245.1 lncRNA downstream 72205 13277900 ~ 13282536 (-) True LOC117597411
TU97713 lncRNA upstream 406723 13762417 ~ 13853595 (-) False si:dkey-67c22.2
XR_004578196.1 lncRNA upstream 530953 13886647 ~ 13889526 (-) False LOC113523953
XR_004578194.1 lncRNA upstream 530953 13886647 ~ 13889526 (-) False LOC113523953
XR_004578191.1 lncRNA upstream 530953 13886647 ~ 13889526 (-) False LOC113523953
XR_004578193.1 lncRNA upstream 530953 13886647 ~ 13889526 (-) False LOC113523953
XM_026946891.2 mRNA downstream 23850 13322630 ~ 13330891 (-) False si:dkey-3d4.3
XM_034304308.1 mRNA downstream 23930 13322630 ~ 13330811 (-) False si:dkey-3d4.3
XM_026946882.2 mRNA downstream 24034 13322630 ~ 13330707 (-) True si:dkey-3d4.3
XM_026946245.2 mRNA downstream 33203 13313992 ~ 13321538 (-) True inhbb
XM_034304676.1 mRNA downstream 104193 13191714 ~ 13250548 (-) False gli2a
XM_026912643.2 mRNA upstream 95498 13451192 ~ 13715233 (-) True lrp1bb
XM_034304483.1 mRNA upstream 442343 13798037 ~ 13809445 (-) True atp1a1b
XM_026913033.2 mRNA upstream 466234 13821928 ~ 13828093 (-) True mab21l3
XM_034304898.1 mRNA upstream 476102 13831796 ~ 13832700 (-) True LOC117597444
XM_026913012.2 mRNA upstream 477807 13833501 ~ 13842569 (-) False rcan1a
TU96948 other downstream 626716 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 638072 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 2319180 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 2383584 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 2745699 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 1196757 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 1472092 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 1707731 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 2864270 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 3672613 17028307 ~ 17039843 (-) False mettl8

Expression Profile