RNA id: TU97953


Basic Information

Item Value
RNA id TU97953
length 1657
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G82604
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14293937 ~ 14295810 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaagagaaaagagaatgaggtgaaagtatttattttataacagaacAATGATATCAGTCTACCTTTCTGCAAAAAAACCTCAGAACACCTCATTCCAAAATAAACACTTGGAGAAAATGTGAAGAGCATGGTCTTCAAGTATGAATGGCAAGTggaaatgaataattcattgtGCACTATAATGACAATATAGACTATTTATGCAGTACAATACACTATTtatgcagagagacaggaggaggactagagaagcagagagaataAACAGCAGAAAAGAGATTCAGTGTGCCCAATGCTTCTGAAAGCTCTTCATTAAACACTAGCACTTTGGATAATTTTCGAAGCCTATCCTTTTCAGGTAATTTCCTAGTTAGAGCAGCTCTGTATGCGGTGCTTAGAGATAATGCAGCCTATTGATAAGATATTTTGCAAAATAAGAGCAGCACCACTCTAAGGGTTTGTAAACACAGTTGAATTAGCAGTGATGAAGTAATTATGCATTACTGAGACAatatagagggaaaaaaacccagattTTCCAGTAGATATTTTAACGGCTGTTTAGGGATAACATATAGAAAggacaaaaaaacccaacacactGACATCGCAGCTTTGGCATTTAACTTACTTTAGCTTTCGACACACATGACCTAGATTGTTTAACAATGGCTCCCATTTGTCCACTGTGACCtagagaaaagaggaaatatgtttaattaacGACAGGGTCCAATATTTACACCATAGTACACTTTTCAAACAAAGTTATAGTTAGAGAAAATCAACATTAACCCTTACATTTATTCATAGGGATGACACTTTTaaccaaagtgacttacaagtgaGATAGGATAAAACTGAGCAGTTGATGGTTAAGAGTCTTGTTCAAAGGGCTCAATGGTGGCAGTTTGTCAGGATTTTCACCAgcagccttaaccactgagccacgactgcccaaaaaaaaaaatttcatttcaacaaTCCAGACAAAATTCTCTCACAGAATGACTGGGTAAATACCTCATTGCCAATAGCCTTGATCTTCTCCAATGCATCTATAAACAACTTCTCTGCCGTCTTCCAGCTGAAACAGTACAACTGGCCACCACGGCAACCTCATGGATGACGAACGGATCCTCTGGAGCGATGCTCAGAGCCTGGCTAAAAAAGCGCTCTGCTAGCTTTGGGTTGTTGGTGAGGCCGTACTCCAGACCGATATACAGCATGGGTGTACTTACCCTTTCATTAGCTGGGCGGCTGTGAAGTAAGCTGCCATGGCCTGGTCATGCTCACTTTCCACTGCAAATGAATGACCATATGCGATCCACGCTGGCCCGTATGTGCGCTCCAGTGTAGTGGCCTTACTACAACCCAAACAAAACATCACACTGACTAACAGCTCATCAGGACTTTTGATTATCAGCACTTTCACACTAGCTAGAATTAAGGGCAGAGCTGTAGCACAGTGACGATACATCCGCATTCGGCATGCGCCACTGTACAGCATGCTTGGACTCACAGTGCTGAAACTCTGGTTAAATCAATGCCTATCTGCTGCATTAAATGCAAGTCAAACCTGATtctaaaaacacttcagaaatgcATCGGGTGTATGTGATTCAGTGACTGACTCCAAATCATGAAATGCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578251.1 lncRNA downstream 342104 13945298 ~ 13951833 (-) False LOC113526223
XR_004578250.1 lncRNA downstream 342105 13943807 ~ 13951832 (-) True LOC113526223
XR_003402750.2 lncRNA downstream 374731 13917103 ~ 13919206 (-) True LOC113526249
XR_004578193.1 lncRNA downstream 404411 13886647 ~ 13889526 (-) False LOC113523953
XR_004578237.1 lncRNA upstream 45228 14341038 ~ 14353940 (-) True LOC117597393
TU98125 lncRNA upstream 305935 14601745 ~ 14605015 (-) True G82756
TU98126 lncRNA upstream 378398 14674208 ~ 14729951 (-) True G82757
TU98129 lncRNA upstream 416772 14712582 ~ 14737784 (-) True G82758
TU98131 lncRNA upstream 432047 14727857 ~ 14792165 (-) True G82759
XM_026913169.2 mRNA downstream 12300 14271488 ~ 14281637 (-) False tfdp1a
XM_026913166.2 mRNA downstream 12301 14271488 ~ 14281636 (-) False tfdp1a
XM_026913167.2 mRNA downstream 12466 14271488 ~ 14281471 (-) True tfdp1a
XM_026913168.2 mRNA downstream 13296 14271488 ~ 14280641 (-) False tfdp1a
XM_026912792.2 mRNA downstream 34531 14253904 ~ 14259406 (-) False jam2b
XM_026946101.2 mRNA upstream 126740 14422550 ~ 14431425 (-) True shox
XM_026912496.2 mRNA upstream 218738 14514548 ~ 14534214 (-) True si:ch211-269e2.1
XM_026912499.2 mRNA upstream 238601 14534411 ~ 14537191 (-) False si:ch211-218d20.15
XM_026912498.2 mRNA upstream 238601 14534411 ~ 14537191 (-) True si:ch211-218d20.15
XM_026912678.2 mRNA upstream 243058 14538868 ~ 14553495 (-) True med14
TU96948 other downstream 1565912 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1577268 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 3258376 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 3322780 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 3684895 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 256641 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 531976 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 767615 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 1924154 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 2732497 17028307 ~ 17039843 (-) False mettl8

Expression Profile