RNA id: XM_026909636.2


Basic Information

Item Value
RNA id XM_026909636.2
length 1559
RNA type mRNA
GC content 0.45
exon number 3
gene id ndp
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14827675 ~ 14837409 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACACACGATCGGTGTgcgtgagagggagagagagagtgagtgagtgagtggggagaggagagggaagAAGGAGGTTTAAAAGCAATTGTTATTGAAGCATTTCCACTTCAGTCCAGGGAGGTGCAGCTGGGCTTGGATATCGAGAGCTGAGAGGAACTGGAGAGAAGaaagaaacacacagacagggcTAAAGGAGATGGCAGTGCATAAAGAACAAATCCACCACACACTCCAGTTTACCAGCGTGCCCACCGAACCCGGACAAAGAGCTGTGAATTTTCCTCTGTAATTGAAGAAGCTCCATCTCTATCCATTTTGTTGCTGGGAAGTTTCCTCTCCTTTGCATTGTGCCAAGGTGCCAATATGAGGAACACAAGTGCATTTAGCCAGCCAGGGATTGTGCTTCTGCTGGTCACGTGTCCTCTGCTGAGCATTCTGCGTGGAGTTACCTGTAAGGCTGAGAGTGGACACCTTGGGGACTCCGATCCTGACAGGTGTATGAGACACCATTTTGTGGAGACCATCACACATCCCATCTACAAGTGCAACTCCAAGATGGTACTCCTGGCTCGGTGTGAAGGTCACTGCAGCCACACATCTCGTTCAGACCCTCTCATCTCCTTCAGCTCCGTTCTTAAGCAACCATTTAAAAGTACATGCTTCTGTTGCCGCCCACACACCTCCAAACTGAAAGCAGTGCGTCTGCGGTGCTCTGGTGGGACTCGAATAACTGCCACCTACCGGTACATCCTTGCTTGCAGCTGTGAGGAATGCAACTGAATGGGCTTGCCAAGAAGAAGGAAATGGCTAAGCCCCATTTtatatgtgttttattgctGTCCATATTAAACAAACTATTACACGATTCATTAGCAGTGCTGGTATGGATGGAGATTAAGCCAGCAGCATAAAAATCCAAGAAAAGAAACATTCACGAGTTGGTTGCACCTGGGCCTGGTCTCTGccagttgattaatttctaatGCATTCCACTGCTTTGATCACagcatgtgaaaaattatgGATGCTGGCAACAACATTGCAGTTTAAGAGAGAACTTAGAAGGTATCGTATCCGTTCCGGGATGGAGACATTCCAACGAAAGCGAGAGAACTCTCGGGAATTGTTCACAGGTTGCAGAGATGCCAGGGTAATGTCTCTGTTGCAGCTGTTGGACACTGTAATGTCAGTGCTCGGACTATAAGCGGAAAATGGCCATTTCATGTACGTCTGGTCAAATATAGCATGCACTGTTAAGATCATTATGTTGAACAGGACTGAGTTGTCAAAGGAAAATTAAAGTTCGTAATGACAGAAATGCCCATGGGGCTCCTATGTTAAAATCACAAAAGAATGCTGCATTTCTTTAAGTTAGCATCAGAATTTCATTAGTTTACAATAACACGGAGCAGCCTTCTATAAAAGTCTTTGTCGTGCTTTGCTGTAATTGTACCCTTTGTGAAGTTGCACAGAGTTtgtaattatgaaaaaaaaaaaaaaccctgacagCTCTGTTGGTTCCATATGTGAATCTAATAAATGACTTTTTGTTTGTA

Function

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98131 lncRNA downstream 35510 14727857 ~ 14792165 (-) True G82759
TU98129 lncRNA downstream 89891 14712582 ~ 14737784 (-) True G82758
TU98126 lncRNA downstream 97724 14674208 ~ 14729951 (-) True G82757
TU98125 lncRNA downstream 222660 14601745 ~ 14605015 (-) True G82756
XR_004578237.1 lncRNA downstream 473735 14341038 ~ 14353940 (-) True LOC117597393
TU98251 lncRNA upstream 82340 14919749 ~ 14920280 (-) True G82849
TU98260 lncRNA upstream 134269 14971678 ~ 14971897 (-) True G82858
TU98263 lncRNA upstream 153807 14991216 ~ 14991486 (-) True G82861
TU98266 lncRNA upstream 165125 15002534 ~ 15004759 (-) True G82864
TU98371 lncRNA upstream 247954 15085363 ~ 15105616 (-) False G82904
XM_026912145.2 mRNA downstream 3128 14793906 ~ 14824547 (-) True mao
XM_026912841.2 mRNA downstream 67961 14619022 ~ 14759714 (-) False caska
XM_026912840.2 mRNA downstream 67961 14619022 ~ 14759714 (-) False caska
XM_026912836.2 mRNA downstream 67961 14619022 ~ 14759714 (-) True caska
XM_026912842.2 mRNA downstream 67962 14619022 ~ 14759713 (-) False caska
XM_026948095.2 mRNA upstream 5091 14842500 ~ 14851402 (-) False efhc2
XM_026948104.2 mRNA upstream 5332 14842741 ~ 14851402 (-) True efhc2
XM_026947519.2 mRNA upstream 16335 14853744 ~ 14857520 (-) True fundc1
XM_026912806.2 mRNA upstream 62750 14900159 ~ 14904735 (-) True dipk2b
XM_026946689.2 mRNA upstream 175852 15013261 ~ 15021348 (-) True slc35a5
TU98093 other downstream 274216 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 2099650 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 2111006 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 3792114 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 3856518 10969417 ~ 10971157 (-) True G80600
TU98290 other upstream 226016 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 1382555 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 2190898 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 4643711 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 4731342 19568751 ~ 19573463 (-) False steap3

Expression Profile