Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000682 |
| length | 1648 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 6 |
| gene id | XLOC_000399 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 33697170 ~ 33722780 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001510 | RNA methylation | biological_process |
| GO:0002127 | tRNA wobble base cytosine methylation | biological_process |
| GO:0070129 | regulation of mitochondrial translation | biological_process |
| GO:0031167 | rRNA methylation | biological_process |
| GO:0032259 | methylation | biological_process |
| GO:0005759 | mitochondrial matrix | cellular_component |
| GO:0005762 | mitochondrial large ribosomal subunit | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0016428 | tRNA (cytosine-5-)-methyltransferase activity | molecular_function |
| GO:0000049 | tRNA binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0008168 | methyltransferase activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050706-95 | Predicted to enable tRNA (cytosine-5-)-methyltransferase activity. Predicted to be involved in rRNA methylation; regulation of mitochondrial translation; and tRNA wobble base cytosine methylation. Predicted to act upstream of or within methylation. Predicted to be located in mitochondrial matrix. Predicted to be part of mitochondrial large ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 48. Orthologous to human NSUN3 (NOP2/Sun RNA methyltransferase 3). |
| ensembl_id | ENSDART00000131664 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002850 | lncRNA | upstream | 178347 | 33517802 ~ 33518823 (+) | True | XLOC_000394 |
| TCONS_00000651 | lncRNA | upstream | 1679055 | 32017437 ~ 32018115 (+) | True | XLOC_000383 |
| TCONS_00002849 | lncRNA | upstream | 1684792 | 32011880 ~ 32012378 (+) | True | XLOC_000381 |
| TCONS_00003083 | lncRNA | upstream | 1685376 | 32010262 ~ 32011794 (+) | True | XLOC_000380 |
| TCONS_00000637 | lncRNA | upstream | 2176198 | 31519239 ~ 31520972 (+) | True | XLOC_000371 |
| TCONS_00003084 | lncRNA | downstream | 508823 | 34231603 ~ 34234056 (+) | False | XLOC_000404 |
| TCONS_00002851 | lncRNA | downstream | 508958 | 34231738 ~ 34232127 (+) | True | XLOC_000404 |
| TCONS_00003085 | lncRNA | downstream | 727879 | 34450659 ~ 34454447 (+) | True | XLOC_000408 |
| TCONS_00002852 | lncRNA | downstream | 1134588 | 34857368 ~ 34859323 (+) | False | XLOC_000414 |
| TCONS_00002853 | lncRNA | downstream | 1134588 | 34857368 ~ 34861057 (+) | False | XLOC_000414 |
| TCONS_00000680 | mRNA | upstream | 2375 | 33668244 ~ 33694795 (+) | False | XLOC_000398 |
| TCONS_00000679 | mRNA | upstream | 12954 | 33668236 ~ 33684216 (+) | False | XLOC_000398 |
| TCONS_00000678 | mRNA | upstream | 33465 | 33647682 ~ 33663705 (+) | True | XLOC_000397 |
| TCONS_00000677 | mRNA | upstream | 61866 | 33634186 ~ 33635304 (+) | True | XLOC_000396 |
| TCONS_00000676 | mRNA | upstream | 127925 | 33558555 ~ 33569245 (+) | True | XLOC_000395 |
| TCONS_00000686 | mRNA | downstream | 246235 | 33969015 ~ 34200954 (+) | False | XLOC_000402 |
| TCONS_00000687 | mRNA | downstream | 246257 | 33969037 ~ 34201195 (+) | False | XLOC_000402 |
| TCONS_00000689 | mRNA | downstream | 458801 | 34181581 ~ 34195689 (+) | True | XLOC_000402 |
| TCONS_00000690 | mRNA | downstream | 481037 | 34203817 ~ 34232249 (+) | False | XLOC_000404 |
| TCONS_00000691 | mRNA | downstream | 481078 | 34203858 ~ 34233938 (+) | False | XLOC_000404 |
| TCONS_00000681 | other | upstream | 3266 | 33683231 ~ 33693904 (+) | True | XLOC_000398 |
| TCONS_00000675 | other | upstream | 241938 | 33401858 ~ 33455232 (+) | True | XLOC_000393 |
| TCONS_00000663 | other | upstream | 480452 | 33215241 ~ 33216718 (+) | False | XLOC_000390 |
| TCONS_00000664 | other | upstream | 481087 | 33215243 ~ 33216083 (+) | True | XLOC_000390 |
| TCONS_00000661 | other | upstream | 990943 | 32706109 ~ 32706227 (+) | True | XLOC_000388 |
| TCONS_00000684 | other | downstream | 12238 | 33735018 ~ 33735134 (+) | True | XLOC_000400 |
| TCONS_00000685 | other | downstream | 244377 | 33967157 ~ 33967273 (+) | True | XLOC_000401 |
| TCONS_00000688 | other | downstream | 400100 | 34122880 ~ 34122972 (+) | True | XLOC_000403 |
| TCONS_00000695 | other | downstream | 677460 | 34400240 ~ 34400354 (+) | True | XLOC_000407 |
| TCONS_00000699 | other | downstream | 962665 | 34685445 ~ 34688642 (+) | False | XLOC_000410 |
