RNA id: TU98442


Basic Information

Item Value
RNA id TU98442
length 3216
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G82961
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15371262 ~ 15374502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAATGGGAACCACATGGATGATGCATAATTATATGAAACATCAACACAATAGGATGCTTGTTTATAGATTTGAGTATCATTCCCAAGTAAAAGGGAGTATCTTTTTATAATTTCCGGCTGTGGGCGAGAATTTTTTGACCAATCTCATAGCACAAATCACATCTTATGAATGAGCAGTTTTATAACTGACTAAATGCATCCTCATATCACTAGCTAAGCAATGTAGCAATGAGGAAAACAAATATCAAACTTATTAATTCTTGTGAGATTGTAGCTAAACATATGGCATTTTCAGAGACTAACTGGCTTCCTGCTGTAGCATTACTGATTCTGTAGATATAACAGATGCTAGAACCTGCAGGAACTTTCCGCTTGGGTTGTAACGTTGCAGTGTAACTCCTGTTGCCTTCGAAATCAAAACTTACAGTACTTATACAAGAACATGAAACACAGCATATGGCTAAATCTACCTTGTCCTGAGGCCCTACATGGCTACATAGCTGCTCCTTATATGATGTATTTGACCAAGAAGCAGAAGATGGTGACTAAAGGGTTTATTAGGATGATTGCCCCAATGCATCGCCACTACGATCATTGGAATAGGAGACCGGTCAAGTAAAATCACTATGACACAATCCTCTCTGCATTCATTCTTTAGAAAATAGTTTTACacagtttattataaaaatataaatgtttccaCTACAAATCATTTTACATTAGTAGACAAGGCCATCTACATTTGCACACCCACTTACATCCTCACACTCACATACAAACCACTCTAAAGGAAGAGTAGAGGAGGACAGGGTGGAAAAAACAGTATTGCTCTCTAGCACAACACTGATAATGTCATCACATAACCATGTCATAACTTACTGTAtgctacaaaacaaaaaacactcaaaTTAGCACGGTATACTGTTTGTTATCAAATAAATAGGTCAttactgttgatttttttttgtaaaaaaaaaaaaacaaatatgataCAAAAGagcataaaatataatacaaatgaaattttgcttttttaaagtttgaacagattttctttcattcttttatacatacaaacatttgtACAAAAGGATGGCCAGGTGCGTTCACCATTGCTGTTATTACAGGGTGTGTTTACATATGTACATGCAGAGAGCTGAGGGAGCAGCAACATTTACAGGCAGATTGAAGGGTAGGAAAGGAAGAGCTAAATGTTTCCATCATTTCAGAGAAAGTCACTGTCTATCTAGATAATTCATGATCCGAATAAACCATGTCAAGACACATAAATGGAACCTTTTGAAGCATTATGCATTCTTTTCCCTATCAGatcatttctatttctgtttgtaGCCAAACATTAATTGATGATCAAATGGCACAGAACATTAGTCTGAAGTAGTCGGTTGCATGGTATTtacttcttttctctcttttgcatGCTAAATTCAAATGAGGGCTGTGCATCCTGAGCTTTTGCAGTAGAGACATTGTCTTGACATTGTCCCTGAAGTACTTTCCCTCAAATATATTAGTGCCGTTTGAAGATTTATGAAATTTCACAGCAGGAAATGATACACTTTCCTCTTCACTGAGGTCCTTCATTCCTGTCATATCTAACACTTCCATTGCCCTACTACACTATGTTGTCTGatcttctctctctgtgatcTTACTGGACAGATACAGATGTTAGTAACACTTTTGACCACATTCCAAAACATTTCTCTAAGTGATATCTGAATGTTGCTCAGAAGGAAGCCAGATTAGGAATATACATCTAGAAATCGACTTTACAattgcattgattttttttcaagtacttCACAAATTCACATGTTCACTTTTGGTTAATGTAATTGTTCAGTTACAGGTTTTCTCAACAACAAAAGAAAGCGTCTGCTTTAAGTGGCataaaaagcacaataaagAAGTACATACATAGTCTCTTATTGTTGATCCCTATCTTCTAATTCTGTAATAGTTAATCATATATGCTGCTCAATGTGTCACACCCACAGAAAAATTAGGAAATTACTGAAATATCAATTTGCCTTTATTGGACATTCCTGCTTTGATGGCCAATTGCACTGTAGTTTACTGGAATCCATTCCCAGCTCTCTGGTTCTCTAGTGAAATCTTGAAATTAAAGGCATCTCTTATGTATTGGCAGGCGGTTTTTCTCTTGATCTAGCTAAGACACTCCCCATCCAACATGACAGAAAACCAGTGAGGCGTGTGGACAGAACAGGCCTTGAGTTCATTCTCTCCAAAAGGGTGGCTGCATTACAaagtttttgcattttattaccCTCCTGTCATGTGTTAAGAGCTGTTAGTTGTATCTGCACAGAGGAGACACTTCCAAGTTCCTAATAGCTCCATCTTGCTCTTCATACAGTGCTCTGCTGATCTGTGGAAAGCTTATGGGAGCCTAGAGTCCTGCCCCAGAGCTTAGTTTTAGCAGAGAAGCCCCACCtgctttttattcttctttattaCATAAGGCAATCCATTACCAGGCCACGAGGCACACTTTCTGCCTGAGCAACATGACTGGATGCTGGAACAACAGCCATTCTCCAGGAGCGTTGCTTTATTGTGGCCCTGATATGCTAACATTGTTGTTTATGCCTTTTCTCGTATTCATAATTTCTGTCTTTTAAAACCTAGAGCAGCATCAGTCTCctgaatttctctctcttttgtccatctttttatctattatttgattttttttcattcacttttTAGACAGGAACTGGGCCGTTTTTTGAGTGTGTTTCAAGTGCTTTGATACTGCTCACAATCTTCTTCTGAGGTCCAACAAATGTTACACCGACCTTCTTGAAGTCCCTGAGAGatgaaggagagggagagaaagagtatGAGTGGTGCAATATTCACTGAATGACAAGTTCaaatctgtcagtcacagagaTAGAAACATTTGCAGCAGGCCGCTGAACTGCCATAGTTGGCTGAGGAAGAGTCCCGTGAAAGGCTTTAGACAGTAAAAAATCTGATTCCAGGATTCTTTGATAAAAGGTTTAACTTGCTGCTTTGGAGATTTAACAGAAACAAGCTTCCTTTGCTCTGATTTGAACTTTGGGATGAAGAACAGCACCTTTTTTAGTTCCATGCAATGGGTAAGAGAAGAGAGCCTGCAGATCCACCAAGCATGTTATACATTACTCATCCCATGCACATCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98423 lncRNA downstream 158943 15209315 ~ 15212319 (-) True G82943
TU98372 lncRNA downstream 245614 15085363 ~ 15125648 (-) True G82904
TU98389 lncRNA downstream 260780 15107053 ~ 15110482 (-) False LOC117597380
TU98371 lncRNA downstream 265646 15085363 ~ 15105616 (-) False G82904
TU98266 lncRNA downstream 366503 15002534 ~ 15004759 (-) True G82864
TU98718 lncRNA upstream 112581 15487083 ~ 15487834 (-) True G83171
TU98721 lncRNA upstream 173779 15548281 ~ 15600586 (-) True G83173
TU98774 lncRNA upstream 304948 15679450 ~ 15714440 (-) True G83216
TU98850 lncRNA upstream 455627 15830129 ~ 15887375 (-) True G83270
XR_004578248.1 lncRNA upstream 479558 15854060 ~ 15858049 (-) True LOC117597420
XM_034304357.1 mRNA downstream 158398 15155587 ~ 15212864 (-) True myo1b
XM_034304358.1 mRNA downstream 158399 15155587 ~ 15212863 (-) False myo1b
XM_034304359.1 mRNA downstream 158399 15155587 ~ 15212863 (-) False myo1b
XM_034304363.1 mRNA downstream 158400 15155587 ~ 15212862 (-) False myo1b
XM_034304361.1 mRNA downstream 158400 15155587 ~ 15212862 (-) False myo1b
XM_026913001.2 mRNA upstream 44240 15418742 ~ 15424049 (-) True stx19
XM_026912869.2 mRNA upstream 52352 15426854 ~ 15430622 (-) False rsph1
XM_026912868.2 mRNA upstream 52352 15426854 ~ 15430622 (-) True rsph1
XM_026912611.2 mRNA upstream 61463 15435965 ~ 15441651 (-) True fbxl3a
XM_026910423.2 mRNA upstream 67882 15442384 ~ 15505351 (-) False mycbp2
TU98290 other downstream 294067 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 533869 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 817803 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 2643237 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 845462 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1653805 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 4106618 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 4194249 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4852226 20226728 ~ 20237615 (-) True G85848

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000080_04488197_04502798.mRNA True 2783 mRNA 0.36 6 CI01000080 4487831 ~ 4504534 (-)
bowfin (Amia calva) AMCG00014257 True 5342 mRNA 0.50 14 CM030128.1 6814181 ~ 6860542 (-)
tiger barb (Puntius tetrazona) TU100657 True 447 lncRNA 0.30 1 NC_056707.1 5735337 ~ 5735783 (-)