RNA id: TU98774


Basic Information

Item Value
RNA id TU98774
length 2700
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G83216
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15679450 ~ 15714440 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTCTTACTTTAGGCTTTTAATATGTAAACTATTCAGCAACTTCACTAGTGTAATCACAATTATAAGTTATACTgacataaattattaaatatcttACTTTTCAAGATAATACAAATAAGCAGGAAAAATAGAGAAGTCAGTGTAATATTGTCTGTCTACTTCACTGAGATGAGCATGACACTGCACAAGTAACAAAATATTTACCTTTAAACTATAATGTCAAATCTGCAGTACACAGctttaaataacacaaatagCAATAGGTCATACATGAAATATAGGaatgtacataaaataaagtcagtacACAAAGCCAGCACATTTATGTCTGTTTATACTTACAGCAAAAGCATATACAATCCCACTGTGAAAGAGGCAAAAGTGTATATCTGCAAATACTGTACACATAAattatgagttttttttagGGTGGTCAGCaaatttttcttttccacatttAGTTTTAGATAATGCCTACAATAGCCACctccaaaggtttttttttaatggcaatTTGAAATCATGTAAACAAAATAGCCTCCTCTGTTTTTCCTTCAGAATTTGAGTCATGGCACCATGAAGAAGAGAAATTTTTCACTGTAGCGATTCACATACAGATAGCACGAGCAGCCACAGTGCTGTATGACTTTGGACCATGCTCATGAGAAATAATCGTTGATGATATGATGCCACAAACTGAACATCCACACCACTTTAATAGTAATACATGTAAGCATGAAGGGATAGAATAGCATGCATTAGTGTTCATGTGAAACCATAGGTTCTACTACCCAGATCTGCCTATCCTAACTGCCTATTCCAACATACATATCTCTCTAAACCATACTTTGAACTGCTTCATTTTTCTGAATAATACATGAAATGATTCAACATGTATGGCAATAGGTCAGTTTAAACTGAATGACTGGTACCTAGAAGCCTCTTAgcgtgctttcacatatgcagcatttagtccatttgaatcaaaccctggtgtgttttccccTTGGTGTGGTTTGTTTGTGCAGATGAAAACACAGAAATCGCATTTGGGTGCAGTCCAAAACAACCGGTTTGAGGCATTCTGGCGAGGTCTGGTTCCAAGCAAACGCTAGCAAGGTTTGAAAGCAATTCAACCCTGAACCAAtcaaactgcaggaagtgaaccaaacacgccttgtattttgcattttttgtatATGCGAGAGCTGTGAGgcgcaaactgagccaaagtaCAGAGCGGTAGTGCCGTAGAAATGCTATGCTAAAAAGTAGAAATAATTGTCAGATTAAATGTTttaactagttatttatataattatctagtaaTTTATTGAGCATTGGgtgatttttgcacatttcacaAAGCTTTGTTTGCCTTTCTTCATtgttgtatttctgaccaatgaatgaatgaggttTATGAGTATGTTTTCAGCCATGCACAGCCCTCTACCaagttttttgctttttggtttgtttaattatgtgcactGCGAAACTAAACCAAACCAGgtagaaaacaaaccaaaaatatcaATTTTGCTCTGACTACAGCTCAGCAAATGGACTAACAGGTATGAAAGCATCCTTATACGTAACCACAGGGCAGGCATATTATTAATACTCAAACAACTACACAAACTTCTGGTGGTTTTAATATTGGGCCTAGTGTGGGGAATATACAGTTCTGAGATACTGAAATAAGTTGGGAAGGACCTACATGGCCATTCCAGGGTAAAGTGCTACCTTCATGGGGAGTGCACAGGAAAGTGCAGTCAGTGAGAGGAATGAGATAGTGTGGGAAAGACTGTGGTGGTTGATTTCCTGCTGGAGTGTAAAACATCTCCAGGAGACATAAGGAGTGTGATTAGTGACCAAGTTATGCAGGCACTGGCAGCTGTGGTTCATTCATGGTTCAAATTAGAGTGGTTCTCTGAGGAATCTAAGCAACCACAAACATTACGAACAGAAAGAACTCAAGAAACATCTATATCAAAGTCTGGGTAAGGAAATATGAATTACCATTAAAATcagaatttaaaacaaaattaactgTCAAATTTTTGTCTTTCTAGGATATGCCATCTACCATCTTTGACAATCCAGAAATAAGAATCAGTTCATTTTATACAGTTACTCCTGCACATAAACAGAATCAaatgggagggaaaaaaaaacagttctacaACCATAATATCTGTCCCTCTCAAGCAAAGAACATGACCCACATGCCCACATCAGGTACAAACTGTACATAGTGTCTCACTATTACAGTAACTATAGAAAACTGTTAACACAAATAACTGGTTAAGAGTTTAATTTAGAAAATTGGCAAAACTGCCCTACTTCATACTACAGAGCTTCTTTGCCTGTTTAGCAGCTTGTCATTTACTgactatttaaaatgttaagtaTTTACTCAACTTAAATGTactcttaaaaaaatattaatttgtgttCCTTAATTTTTGGCAACAGtgtattttatacagtttagTATACCAAGTGCACTCAGATGTTAATGAACATCTGAGTGCACCACACCATCCGACCTTTTCAGtcatacaaaaaatatattttatatatatgctgTGTTGTCATAAATACTTATCCATAAGGGCCTTTTAATAAATTCAGTGCCATAGTGAGATCACACATTGAAAAGGgaaagGCTTCACACAAACTACAAATTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98721 lncRNA downstream 78864 15548281 ~ 15600586 (-) True G83173
TU98718 lncRNA downstream 191616 15487083 ~ 15487834 (-) True G83171
TU98442 lncRNA downstream 304948 15371262 ~ 15374502 (-) True G82961
TU98423 lncRNA downstream 467131 15209315 ~ 15212319 (-) True G82943
TU98372 lncRNA downstream 553802 15085363 ~ 15125648 (-) True G82904
TU98850 lncRNA upstream 115689 15830129 ~ 15887375 (-) True G83270
XR_004578248.1 lncRNA upstream 139620 15854060 ~ 15858049 (-) True LOC117597420
TU98865 lncRNA upstream 163180 15877620 ~ 15879115 (-) True G83285
TU98894 lncRNA upstream 206385 15920825 ~ 15923179 (-) True LOC113526197
XR_003402738.2 lncRNA upstream 206527 15920967 ~ 15923209 (-) False LOC113526197
XM_026912457.2 mRNA downstream 52829 15560485 ~ 15626621 (-) True vwa8
XM_026910462.2 mRNA downstream 174099 15442384 ~ 15505351 (-) False mycbp2
XM_034304485.1 mRNA upstream 30067 15744507 ~ 15761304 (-) False epsti1
XM_026910928.2 mRNA upstream 30067 15744507 ~ 15761304 (-) True epsti1
XM_034304484.1 mRNA upstream 30067 15744507 ~ 15757744 (-) False epsti1
XM_026910919.2 mRNA upstream 65087 15779527 ~ 15830018 (-) True enox1
XM_026911892.2 mRNA upstream 149603 15864043 ~ 15892972 (-) True tsc22d1
TU98290 other downstream 602255 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 842057 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1125991 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 2951425 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 505524 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1313867 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3766680 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3854311 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4512288 20226728 ~ 20237615 (-) True G85848

Expression Profile