RNA id: TU98894


Basic Information

Item Value
RNA id TU98894
length 602
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC113526197
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15920825 ~ 15923209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttttccttttttgctcGAGGCGCATGAAGTGTGCACGTGCCAGCGCAAGGTTATAAGCATGCTAATCATGAATCTAATGGAAAAATAAGCAGAAACACAGCAGATCCACCATGAtttcatgtttctgctcagcaACTGATCACCGTCCCGGATAGTATGGACACCGGGAGACGTGTAGGTGGACTGATCAGATGGCTGAAGGGAGCAGTACCTAGTCCTTTCTGAGGTTTTGTGCTGATTTTGTCAAACTACAGCAAAGATAACCATACCAGTACAGAATCTTCTGTCATGTGGAGACTGAAAAAGTAAAGACTGGGATTGATGAGCACATCTCAGATGTTTGCATGATATATAGCTACAagctatataatatatatacactatattaccaaaagtattcggtcacccatccaaatgatcagaatcaggtgccctaatcacttggcctggccacaggtgtataaaatcaagcacttaggcatgcagactgtttttacaaacatttgtgaaagaatgggctgctctcaggagctcagtgaattccagcgtggaactgtcataggatgccacctgtgcaataaatCCAGtcatgaaatttcct

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98850 lncRNA downstream 33450 15830129 ~ 15887375 (-) True G83270
TU98865 lncRNA downstream 41710 15877620 ~ 15879115 (-) True G83285
XR_004578248.1 lncRNA downstream 62776 15854060 ~ 15858049 (-) True LOC117597420
TU98774 lncRNA downstream 206385 15679450 ~ 15714440 (-) True G83216
TU98721 lncRNA downstream 320239 15548281 ~ 15600586 (-) True G83173
TU98904 lncRNA upstream 16320 15939499 ~ 15940056 (-) True G83309
TU98901 lncRNA upstream 16420 15939599 ~ 15940056 (-) False G83309
TU98926 lncRNA upstream 20561 15943740 ~ 15968374 (-) False pou1f1
TU98939 lncRNA upstream 45639 15968818 ~ 15969346 (-) False pou1f1
TU99071 lncRNA upstream 86777 16009956 ~ 16012207 (-) True G83446
XM_026909849.2 mRNA downstream 12394 15906927 ~ 15908431 (-) True kctd4
XM_026911892.2 mRNA downstream 27853 15864043 ~ 15892972 (-) True tsc22d1
XM_026911899.2 mRNA downstream 50601 15864043 ~ 15870224 (-) False tsc22d1
XM_026911906.2 mRNA downstream 53402 15864043 ~ 15867423 (-) False tsc22d1
XM_026910919.2 mRNA downstream 90807 15779527 ~ 15830018 (-) True enox1
XM_026912773.2 mRNA upstream 22391 15945570 ~ 15948341 (-) True vgll3
XM_034304766.1 mRNA upstream 44765 15967944 ~ 15973914 (-) True pou1f1
XM_026911637.2 mRNA upstream 76498 15999677 ~ 16009824 (-) False zgc:152951
XM_026911632.2 mRNA upstream 76498 15999677 ~ 16009824 (-) True zgc:152951
XM_026911620.2 mRNA upstream 93010 16016189 ~ 16024344 (-) False acod1
TU98290 other downstream 843630 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1083432 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1367366 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3192800 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 296785 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1105128 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3557941 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3645572 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4303549 20226728 ~ 20237615 (-) True G85848

Expression Profile