Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003402738.2 |
| length | 490 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 5 |
| gene id | LOC113526197 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047599.1 |
| NCBI id | CM018545.1 |
| chromosome length | 32114633 |
| location | 15920825 ~ 15923209 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU98850 | lncRNA | downstream | 33592 | 15830129 ~ 15887375 (-) | True | G83270 |
| TU98865 | lncRNA | downstream | 41852 | 15877620 ~ 15879115 (-) | True | G83285 |
| XR_004578248.1 | lncRNA | downstream | 62918 | 15854060 ~ 15858049 (-) | True | LOC117597420 |
| TU98774 | lncRNA | downstream | 206527 | 15679450 ~ 15714440 (-) | True | G83216 |
| TU98721 | lncRNA | downstream | 320381 | 15548281 ~ 15600586 (-) | True | G83173 |
| TU98904 | lncRNA | upstream | 16290 | 15939499 ~ 15940056 (-) | True | G83309 |
| TU98901 | lncRNA | upstream | 16390 | 15939599 ~ 15940056 (-) | False | G83309 |
| TU98926 | lncRNA | upstream | 20531 | 15943740 ~ 15968374 (-) | False | pou1f1 |
| TU98939 | lncRNA | upstream | 45609 | 15968818 ~ 15969346 (-) | False | pou1f1 |
| TU99071 | lncRNA | upstream | 86747 | 16009956 ~ 16012207 (-) | True | G83446 |
| XM_026909849.2 | mRNA | downstream | 12536 | 15906927 ~ 15908431 (-) | True | kctd4 |
| XM_026911892.2 | mRNA | downstream | 27995 | 15864043 ~ 15892972 (-) | True | tsc22d1 |
| XM_026911899.2 | mRNA | downstream | 50743 | 15864043 ~ 15870224 (-) | False | tsc22d1 |
| XM_026911906.2 | mRNA | downstream | 53544 | 15864043 ~ 15867423 (-) | False | tsc22d1 |
| XM_026910919.2 | mRNA | downstream | 90949 | 15779527 ~ 15830018 (-) | True | enox1 |
| XM_026912773.2 | mRNA | upstream | 22361 | 15945570 ~ 15948341 (-) | True | vgll3 |
| XM_034304766.1 | mRNA | upstream | 44735 | 15967944 ~ 15973914 (-) | True | pou1f1 |
| XM_026911637.2 | mRNA | upstream | 76468 | 15999677 ~ 16009824 (-) | False | zgc:152951 |
| XM_026911632.2 | mRNA | upstream | 76468 | 15999677 ~ 16009824 (-) | True | zgc:152951 |
| XM_026911620.2 | mRNA | upstream | 92980 | 16016189 ~ 16024344 (-) | False | acod1 |
| TU98290 | other | downstream | 843772 | 15063425 ~ 15077195 (-) | False | dcaf6 |
| TU98227 | other | downstream | 1083574 | 14827786 ~ 14837393 (-) | False | ndp |
| TU98093 | other | downstream | 1367508 | 14552451 ~ 14553459 (-) | False | med14 |
| TU96948 | other | downstream | 3192942 | 12713199 ~ 12728025 (-) | False | hspbap1 |
| TU99188 | other | upstream | 296755 | 16219964 ~ 16220866 (-) | True | G83554 |
| TU99754 | other | upstream | 1105098 | 17028307 ~ 17039843 (-) | False | mettl8 |
| TU101475 | other | upstream | 3557911 | 19481120 ~ 19487739 (-) | True | grb14 |
| TU101560 | other | upstream | 3645542 | 19568751 ~ 19573463 (-) | False | steap3 |
| TU101958 | other | upstream | 4303519 | 20226728 ~ 20237615 (-) | True | G85848 |
