RNA id: TU99082


Basic Information

Item Value
RNA id TU99082
length 210
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G83457
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16030534 ~ 16030743 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCAAACAAGCATTTATTTAGGAGCATGGAAACACCAAGTAGAAATCAACTAGTGAAGAGCATGTTAATTGGGAATTGATTAAGAGCAGTCTCTTCCTGCTTTTCGTCTTGCATCTGTAATGACTATGCTGGGTTTAAAGGTGACCTGAGGCAGATACATATCTCAACCCAGAGATTCATTTAAATTGTAAACAAGTTTAATGGCCTGC

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99081 lncRNA downstream 4345 16025382 ~ 16026189 (-) True G83456
TU99071 lncRNA downstream 18327 16009956 ~ 16012207 (-) True G83446
TU98939 lncRNA downstream 61188 15968818 ~ 15969346 (-) False pou1f1
TU98926 lncRNA downstream 62160 15943740 ~ 15968374 (-) False pou1f1
TU98904 lncRNA downstream 90478 15939499 ~ 15940056 (-) True G83309
TU99102 lncRNA upstream 41654 16072397 ~ 16072684 (-) True G83473
TU99103 lncRNA upstream 42097 16072840 ~ 16073071 (-) True G83474
TU99098 lncRNA upstream 43756 16074499 ~ 16076620 (-) False lmo7a
XR_004578163.1 lncRNA upstream 193598 16224341 ~ 16228437 (-) True LOC117597324
TU99247 lncRNA upstream 343842 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XM_026911620.2 mRNA downstream 6190 16016189 ~ 16024344 (-) False acod1
XM_034304534.1 mRNA downstream 6192 16016189 ~ 16024342 (-) False acod1
XM_034304533.1 mRNA downstream 6192 16016189 ~ 16024342 (-) True acod1
XM_034304535.1 mRNA downstream 6523 16016189 ~ 16024011 (-) False acod1
XM_034304532.1 mRNA downstream 6523 16016189 ~ 16024011 (-) False acod1
XM_034304336.1 mRNA upstream 12540 16043283 ~ 16076389 (-) False lmo7a
XM_034304342.1 mRNA upstream 12540 16043283 ~ 16076212 (-) False lmo7a
XM_034304341.1 mRNA upstream 12540 16043283 ~ 16076212 (-) False lmo7a
XM_026912759.2 mRNA upstream 12540 16043283 ~ 16076209 (-) False lmo7a
XM_034304340.1 mRNA upstream 12540 16043283 ~ 16076209 (-) False lmo7a
TU98290 other downstream 953339 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1193141 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1477075 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3302509 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 189221 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 997564 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3450377 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3538008 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4195985 20226728 ~ 20237615 (-) True G85848

Expression Profile