RNA id: XM_034304342.1


Basic Information

Item Value
RNA id XM_034304342.1
length 6131
RNA type mRNA
GC content 0.48
exon number 30
gene id lmo7a
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16043283 ~ 16076620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTTTGTTCTGACAGTACAGGCAGTCACCAAGAAGAGGTTTGGGAGCAGAGATTTCCGGAGTTCTCTCCATAATGGGCTTCTTTTGTGTTGTCTAGTTAACAAGATCAAGCCAGCCATAATCAAGAGTATTAACAGACTTTCCACACCTATTGCTGGCCTGAATTCCTGTATGATTACAGCCTGACGCAGAAGTTTGGCACATATTCCTTGTCGAGAGGACAACGTCAACATCCTTCTTAAGGCTTGTGCCTGGACTAAAAGAAGCCTGCTTTTTCATCCCGGGTACCTGCAGGATATATACGCAAGTGCAACTCTCAAGCATCAGAAGAGCAGCAGGAGCCTtaaaaatGCACTTGATGATTGCGCTATTCCACGGGGCAGTGTAAGAGACAGCAGCATTGGAGACGCCTGCTCCTTAAAAAGACAGGAGCTCTTCCCACTACAGGCTGCAAACAGGAGAGAGGACTCATTGGACGGCCTGAACTCACTTGACTCCCTCCTGGACTCACAGAATATCCCCAAGACTCAAAAACAGCACTAAGGGCAGTCTCAGTTACCCTGAAACAGAGCTGGTATCCATGATGTCAGAAAACAAGGACTACCGCCGCTCACTGGTGGTCACTCCAAAGACCAGCACTCAGTTCAACCAGTTCCTGCCAAGCAAAGACAAGCAGTCAGGCTACGTTCCAGCACCACTACGCAAGAAGCGTGCTGACACTCGCAATGATGAAAACAGACGCAGCTGGGCCAGTCCCATGTTTACAGAGGAGGATGGATCTTTCTCTAGGATAGGCACAGGCTCGTCCTCCACCAATGAACTAGGCATTCAAACTTCTACGCAAGCTGCCTGGCCATTCGGGTATGAGAGCAGTGATTCAGAGGCAGACCGTCCGGACCCTGACCTGCTCCTTGATGATTTGGCCAGCCGCCGGTTTCACACCCCCTCTGTCGTCACACCCACCAACTTTGCATTACCCGTGACCTCAGGGGAATCCACCACTATGCCCCAAACCACCAGACCAAAGGTCATGGTTACTAATGTGCCCCAACCAACGTTGACCTATCTCAGCAGTGAAGCTAGGCCTCCTCAGAAGGCTGCTAGGAGGTCTGCATCTGCTGATGTCTACATGTATGATGACTCGGAGGAAGAAGATGATGAGATTGGTTATGCTGATCCTGTTCATGATGACCTTTATGCTCGTAAAGTGGGCCTGACAGTAGTCCAGCCCATTTCCACTGTGCACTATGATAAATTTCTCCCAAAGTTCTGGACACCGGAGGAAGACATGCACGTGCAGAAAATCAGAATGGGCTCACAGCGTCGGCCCTGGTACAGAAAGATCCAGGGCTTCAGCCAGAAGAAGTCTGGCTCATCCTCAGAGGACTCCGACTGTGATGTCAGTCCCCAGCTCTGTGTGTCCTCTCCCTCTCATTCTGAACCCCCTTCCTCACACGCACAAACTTCAGCACAACTCAGTCCCATCACTCCCAGTCCTACCACACAGCCACTCATCCTCACTCAACAGACCTCTGGAGCCCAAAGGTTTCAGCTCCCTGATTTCTGGCCCAGGCCAGACCCCACCTCAGGTCCAAGACTGATTAAGTGCAAAAGACATCCACTATTAGGGCGGGAGCACCCTAACGACCCCTACAATGTATCTGATGACATTCTCCCTGACTTGGAAAATGATGACATGTTTAGCCGCCGCACATATGCCTTCCACTCTAACACTGAGCTGGCCAGGATGAAATATGGGGGTCTGCTTACCTCACATCACAGGTCTGAGCCGTCTATCAGAGTGGTCACTCAGCACAGCGATGCCAAATCTACTTACCCTGACATTGAGAAAGACGATGTGGTCACCCGCAGGTTACAGCATCAGTCTACACTGTGCCCCCTTTCAGGAGCACCTAATAACTATCACCCTGTGCCTATTCCTGAGCCCTGGGCCCTGCCACAGAAACTTCAGGCCAAGATATCTGCCCCGTGCCCCCCAATACAGGTGCCTGCTCAGGTGCGTGCGAAACAGAAGGGGGACGCAAACCGAAAAATAGATGATATGCTAGTTAGGAAGCTTGGAATTGTGCATGTCCAGAATCCCACTGAGGTATCTCAGAGATCAGTTGGAACTCAAACAGGCCCGAGTGTGCCATCCTGCAGTGAGGAGGATCTCCAAAAATGGCAGGCCATCAGAGAGGCCAGTCGCCTAAGATATAAGAAGAGGCTGATGGTGGAGAGACTGTTGCAAAAGAACTCAGATAGTGACGGGTCTAAATCATTGAGTGACATCCCTGTTGAGCAGACAGTCCAAAAGGTTCAATATGAGGATCTGCAGAAGATTCGTGTGCAGGTGAAGGAGAATGAAGACAAGTGGCAGGATGATCTCACTAAATGGAAAAACAGGCGCAGGAGTGTTAACTCAGATATCgtgaagaagaaggaagagagagagcagattgAGATACTTAGTTCAGGCAGCAGCACCCGGAAATCAAAGACCTTCAAGGAAATGGAAGAGGAGAGGGAAAGCCGAGAGCCAGGCTTCAAGAGTCGCTTCGCTACCTTCTCCACTTCTGAAGACCAGGATGTCTTTGATGAACCAACACCCAAGACCAGGGTTTTACCAACACGCAGCTATACCGTCGATAATCCCTACTCCCTGAACCGATCTAAAGTGCGCTCTCTGCCCAGTTTGCTAGATGATGCACCAGAGGCTGGCAGTCTGCCATCAAATGATGTAGATGCTCCATCCAGTCCCATCCAGTCCAACTTAGGGACCACTCTACATACAAGTCAAGGAAAACAAACTAGCATCTCCAGCAGCCATAGCCTTCTGGATGATCCAGTTCCTACTAGTGTCACCAGCAAACCCACTCTACTAGAGCCCACCAGCACCACTCAGTCAAGGGGCACCAGCACCATCTTCAGCAGTCCTCCACTGGAGGCCAACAACAGCTTAAAACCAATTACAAAATCCAGCAACTCTGTTAACCCTGTGCCTGCACCTAGGCAAAACCAAAGCCAGACTTCCTTGTATAAACCAGTTTCAACAGAAACAAAGCAACCCATTGCACCTCGGGTTTCTGCTTCACTCCCCAGGAGCTACCAGAGATCAGATAGTGCACGGATCACTTCTGTCGTCACTCCTAGACCTTTTGGTGTCCCAAGCACCAAAGTTGCCTCCCTGCCCCGTACCTATATGGTGGACGAATCTCAGAAGCGCTTTAATGGTGAGACAAGCGGTAGTAAGCATAATACAGCACCTAGCCGTTATGCAGCATTTGTGAAAGAAGATGACATTAATTCCCAGACCAGTTCTGTACAAAGCAGTAATGAGGATGAAGGGGATGAAGAGGAGCAAGTTTTTCCCCCTACTCAGACCTCCACATCTGTGACTCCAGTCAGTCGTGTAGCTCCACAACCCATAGCAGTGTCTCCTGTCAACAGCACACAGCAGGAAAGCTACAGTGAAATGAGGATCAGCCTGAACCAGAAACCCAACAGCAGTCATGACTTTGGCTTCCAGACTAACTGGGACTCCACAGGGGCCGCTGTCAAATCTATACAACGAGGCAGTCCGGCAGAGCTGTGCCACCTGCAGGTTGGGGATAAGATCTTGGCAGTTAATGGGCAGAAGGTGGCAGACATGAGCTATGAGCAGTGGAAAAGGAGCATGGATGAAGCCCTGCAGGAGGGTAGCCTGTTTATGGACATCCGCAGACAGGGAAAGAGCAATTGGGGAAAAGACCTACCTTCCCTTCCATTTAAAAGCCATAAGGTCATCAATCTCACCAGTGCGGATCCTCTAGGTTCCCCTGAGCCATATGCCAACGTGAGCCTGGACTTCACTTCATACCCAGCCATGGATTCCACTGTGAAAACTCTGAATTCCAGCTCCCAGCCTGTCAATAGTCTGCCTTCCAATGGCATTAATGGTGGAATTCGTGAGGAACCTGTGATTCTGAGAAACAAAGAATCCCTTTCTTTAAAAAACCTTAAAAGGAGATCGGAGTTTTTTGAACAAGGTGGATCTGAAAATCAAATATCAGATCTTCCagttccctctctctcagcctcctCTACTCGCTGGTCCTGGGACCCCGAGGAGGAGCGCAGGCGACAGGAGAAATGGCAAAAAGAGCAGGAGCGCCAGCTCCAGGAAAAATATCAACGAGATCAAGAAAAGCTGGAGGAGGAGTTTAGAAAAGCCCAGCAAGAGGCTCTAGTGGAAGGCACAAAACAATATCAAGAGGAGATGAGGAGCCTTGAGCTGGCGCAGGAGGCCTCAAGACTGGCCCtcaaagaggaagaggagaggaggaggaaagaggaggagaggaaaagaagggATGAACAGGAGCGCCTtgaggaagagaggaaaagaaaggagcAACAGGAGCGCCTtgaggaagagaggaaaagaaaggagcAACAGGAGCGCCttgaggaggagagaaagagaagggagCAACAGGAGCGCCttgaggaggagaggaagagaagggaGGAACAGGAACGCCttgaggaggagaggaagagaagggaGCAACAGGAGCACCTTGAGgaggaaaggagaagaagagaagagcagAAAAAGAGGGAAGAACAGAAACGACtggaagaggagagaaagaaggaagaagaggagctTAAACGAAgggaggaggaaaagagaaggagagaggaagaggtaCAGAGACtgcagaggaaaagagaagaagaggaggagaggaggcgCCAAGAGGCCCAGCGGAGACTTCAGGCAAAGGCCAAGTCCAAATCTACTCCAGAGCTGGATGACAAAGAAAGTACTGATATTAAAGCTGTAAGCAGTGGTCTGGGTGAGAGATCTCTGAGTAAGAATAAGAATGAGCCGGTATCTCAGGCTGAAGCAGAAAGGCAGCAGATCATTCaggacatgaagaagaagactGCATTGTTGACAGACAACAGCTGGATCCGTCAAAGTCCTACCACCAGTATGAACAAACAGCCAGTCAACCTTCCCATGAGGAGAGGTGAGTCTCTGGATAACCTGGACATGACAACAAACCGCCCTTCCTGGAGGTCATCATGGACTCCGGGCACCACTTCCTCCATCCCAGACTATAGCCGTCCTTATTCCTCTCTCGCTGgctcttcttcttcatatcaaTCTCTGAACTCCCATAGACCATCATTGCCCCAGTTCACATCCACCACCGCCACAAATCCCGAGTCTCAGCCATCCTCACGAAACAGGTCAGTCAGTGGCAAGAAAATGTGTACTTACTGTGATATGCCACTGGGCAAAGGAGCAGCAATGATCATCGAGTCCCTGGGGCTATGTTATCATTTGCAATGCTTTAAGTGCATTCAGTGCAAAATTGACCTTGGCGGCTCAGAAAGTGGAGCTGAAGTCAGGATACGAAACAAACAGCTCTTCTGTAACTCCTGCTATATGCGAGTCAAAACAGGGCAGCCAACTGCCATGTGACCTCATGGGATTACAGCAGATTGAGGAAGAACCTGGTCCAGATACATAACCATGAACACTATAACTAAAGTTATGCATTAGGACAGCACTACGGGATGACAGTCAagataacactataaacatctGTGCTTCCTTTTTACCTATTAGAGGGGGAGAGGTAAAGTTATATGTTTCCATAAAGTATTACTGAATATGCTTGCACAAAGTACAAGGGACATGCATTTACTTAGTAGCTAGCAATGTATTTGAAATAATTATCACTGTCTTCTTCACAAATGGAAGCTCTGGATGATTTGTCATGAGGGGCATATGTCATGAAGGTCTATTTTGTAGTAATTTTTGGAGTGATAGAATCTGCTGTTTCTGctgtcttctctttctttttcaagtcTATCTTCATCAGACCTCTGTATGTTATGGTGTGTTGTCAAATATCCTGTAATATTCATCATTGTGCCTTTATGTTTGTGATGGGGAAAGATTATTtagaataaatatattaagaatgtatttaaaagtgGCATGGTTTGTAGGAAGAGTTTTATGGAATTCATTTAAGACAAGTACAATTTTCCACAAACTAAAACAATCTTATACATACAAAAGAAATTGTATTCAccaatatttgtaaataaagtgaCCCAACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99082 lncRNA downstream 12540 16030534 ~ 16030743 (-) True G83457
TU99081 lncRNA downstream 17094 16025382 ~ 16026189 (-) True G83456
TU99071 lncRNA downstream 31076 16009956 ~ 16012207 (-) True G83446
TU98939 lncRNA downstream 73937 15968818 ~ 15969346 (-) False pou1f1
TU98926 lncRNA downstream 74909 15943740 ~ 15968374 (-) False pou1f1
XR_004578163.1 lncRNA upstream 148129 16224341 ~ 16228437 (-) True LOC117597324
TU99247 lncRNA upstream 298373 16374585 ~ 16376286 (-) False si:dkey-91i10.2
TU99271 lncRNA upstream 333216 16409428 ~ 16409893 (-) True G83614
TU99680 lncRNA upstream 889299 16965511 ~ 16966173 (-) True G83953
TU99803 lncRNA upstream 1051098 17127310 ~ 17128680 (-) True G84061
XM_026911620.2 mRNA downstream 18939 16016189 ~ 16024344 (-) False acod1
XM_034304534.1 mRNA downstream 18941 16016189 ~ 16024342 (-) False acod1
XM_034304533.1 mRNA downstream 18941 16016189 ~ 16024342 (-) True acod1
XM_034304535.1 mRNA downstream 19272 16016189 ~ 16024011 (-) False acod1
XM_034304532.1 mRNA downstream 19272 16016189 ~ 16024011 (-) False acod1
XM_034304708.1 mRNA upstream 3350 16079562 ~ 16085068 (-) False uchl3
XM_026947885.2 mRNA upstream 3350 16079562 ~ 16085063 (-) True uchl3
XM_026912661.1 mRNA upstream 22541 16098753 ~ 16099552 (-) True LOC113525961
XM_026912662.1 mRNA upstream 22541 16098753 ~ 16099552 (-) False LOC113525961
XM_026911595.2 mRNA upstream 217680 16293892 ~ 16349242 (-) False neb
TU98290 other downstream 966088 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1205890 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1489824 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3315258 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 143752 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 952095 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3404908 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3492539 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4150516 20226728 ~ 20237615 (-) True G85848

Expression Profile