RNA id: XM_034304896.1


Basic Information

Item Value
RNA id XM_034304896.1
length 5335
RNA type mRNA
GC content 0.48
exon number 8
gene id si:dkey-91i10.2
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16370227 ~ 16406478 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGTAGCTGGACGACGTGGGCAAGTGTCTTAAGGTGGATGTAAGCACTGTTGGCCTGTGGGAGAGGGACAGCGCGGGACAGCGCGGGACAGTGGTGGTCTTTCGGGTTGAAGTGAGACGCGAGTCGGTGGACTTTGGTCCCCGTCGGAGCACGCGCTTGATAAATTTCTGCTCAGCTGTCTTAAATTGGGTAAGATGTATTTACCTTAAAGAACGAACCAGCAGAGGAGGCAGCAGTAAGAGAGGAGGATCCAGAGCTGAGCTTGGAGCAAGCTGCACACAGGGACTTACTTACAATGGGGGCTGTGGTCCCAGCACCTCTCTGTAATGGATGGCAGCTCTTGCTGTGGTCATGCCAGACGTAGAACCTTTGCCATGTGAGTATTCCCCAGCAGCCTCCCCTGCTGGCTGCAGCATGGACCTGGAGTCTTGCTACAGCGAGTTGCCAgatcctctctctgtccttgGCCCCCCACTATCTGGTTTCCCTCAACACAGAAACCCCTCATACATCAACCTAGACGCACCATTGAACCGCTATCCAGCAGGACCCAACAACAACCTCTTTAGCAACATGGGGCTTAGGTACTGTTCCACCAGCAATGTGCATCCACTTAAACAGCCAGAGTCTGAGTCCAGCTACCAGGCAGGGCAACTCTCACAGAGCTGTATTAACTCGGGCAATAATCGACTATACCGTAGCCTGGAAAATCTGCACTGGAATGCAGACCCTGGTATGTACACTTACAGAAGCATGGAGAGTGAGTTTGTTCTCCACTGTACCTCCAGCAGTCAGTGGTATGATGGAACTTCTCAGGGATCACAGGTCACAGGGATCACTATGATGCACTCCCCTGAGAACATGGCTTTCTGTCCTCGTCAGGGACTAATGAGGAAGGACTTGCCTCTGTTTCCTCAGTGGCTTTTTCCTGCTGTGGAGGACTGGGCCATGAACGGAAATGCCCGGAAAGGCCTGAGAGACAAACTTCGCCTTCAGAGTACACGTGTGGCTGAGCCTAACAAGCCCCTTCGCCCTCAGCCTTTGCTAAGTAACACCCCACATTCTTTTAGCGATCATGAAATGGCATCACATTTTGGTCATCTCTCTTCTCCAGGACAGGTGAATGGCAAGAAAGAGCTATATGCTCGTCGTATCACCAGCCCAGAGGAAATCAAGCAGGAGGTGCTGCGGCGGCTACAGCTTCACAGGCAGAGGAGCACGCCTAACCTGGCACTCAGCTCCAGCCAGGAAGCGAACTTCAGCAAGTCGCACACCTCTGAGCATGTCAGCAGTATTGCCCAGTCTGCTTCTGAGAGAAAAAGACCTCCTATGAGTCGCTTGCACATCCCGACATTTGAAGAGTTCAAGAGGATGAGGCAAAAAGAGAGTGCTGAAGGCCTGGGTTCTTCAACAGCTCCAACCAGTGGAGTAGCCAGACAGGAAGGCCAATGCAGAGAAGGAAACTGTGAAGAGAAAGTTAAAGACAGATTACATACTGAGGCTAAAACTGTCACAGAAGTCTGGCAAAACTGCAGCACTACTGATGCAGCTCATCCATGTGGTTCCAGTGGAGAAGAGTCAAGTAATGGCAGGTCCACTGAAGAAGCTTCAGATGCCCCAATCTGCACAGGGCCTGCACCTCGCTCTCCTCTGCAACCCCAGAGTACCACTGCAGGAGAAGAGCACACTGAGAAAGCAGGAGACTCTGAAAGTATGGCTCCACCTGTGGTCCCTTTCCCTCCCAACAGGGAGAGTGCTGAGGGGGCATCAACCTGCTGTCCTGCAATACTCCTGGATGGGAAAGATCTCTCTAGTTATGGAGCCAAGATCTACAAGATTAAGGCGGACCTCCTTGGATCAGCACTGGACCTCATAAAGAAGAGCTGCAGTGCAGAGATCAGCGCCAAAGCCCCCGTCAGGCTGTCACATGACCAGCACGACGGTACTGACATCACCACTCCCCAGCCCGGGTGTCAATCTGCCTGCGTTGCCATGACAACGCCGGCCTGCAGACAGGAGGCTTGCAGTGAAGCTACTGGACGAGAAGAGCCAAGAGAATGCAAGCTCTTTGGGTCAGGATGCAGGCGCTCTAGCTCGGATGCAACCTATGAGCCGGCTGGATCGGTGAGGGCGCAGCGGGAGTGTCGCCTGCGCCCTCACTACAGCGACCCCATGCCCACTGACGCTGCCAAACGCAAGCAGCTGGAGATGAAGATTGCTGCAGCAGCACGTCTCCACAGTCAACGCAGGGACAGAGATAGTGGCATGCGCACAGTTAGGGGCCACTCTGAGCCTAGAGGAGAAGGCCGGAATGGACGCCTGGGTGTGAATCGTGTATGCCAGCACCGCTGGAGCACAGTGAGCAGTGTGAGTGCAGACAGTGGCGTGGTGGGGCTGAGCGATGAGcgtgaggatgaggaggagccACGCCGGACTCGCCACAGTGCCGGCACTGAAGTGGAGAGAGTGGACAGTGGTATCGGGTCTGGACTGGCACCGGGCTGGAAGAGACCCTCAGAATCATTTAAAACATGGGAGACCCAGCGGCCGTGCCCAGACTGTGGCCACCGAGACACCACTCGAGAGGAGGGCATGTGTGAGCGATGCTCGAAGTTACGGACCGAGCGCAAGGAGGCCATTCTGGAGTTCCTCAACACAGAGTCGAGTTACGGCGAGGATCTGCGCATCATCAAGGAAGAGTTCTACTTCCCCATGCAGAGTGCAGGACTGCTCACAGCCGAACAGTTGACCGTGGTCTTCAGCAATGTGCAGGAGCTTATTGATGTGAATGACAGGTTCACCGAGCATCTGCAGGACAATATTGACCAAGCACTCGATCAGGGAGATGAAGATCTGCTCACTGTATGCATTGGAGAAATCTTCTTGGAGTTTGTCAACATGCTGCCAGCCTTTCAAACGTACTGCTTGCAGCAGTCAACATCTGTCAACATGCTTAACACGCTGGAGAAGGAAAAAGAGTTGCTTagGATTTTCCTTGACGTATCCCAGAATGACAATACGGCCCTGCGGCGCATGAATCTGCGCTCCTTCCTCATGGCTCCACTGCAGCGTGTGACCAAGTATCCGCTGCTGTTGAGCCGCATCATCAAGGCCACTAACGAATACCACCCTGATTACGAGCGTCTGAAGGAGGCCAAAAGTCGTGTGGAGTCTCACCTGGAGCACATCAACATGAAGAGCAAGCAGGAGGGCACAGCCACATGGTCCCTGCGCTCCTTCCGGCGCGAGAGCCGCAAGAACCGTGAAGTGATCAACATTGAGATGAGAGAGACATCCATGAAGCTTGTAGGCTGGGCTCGTGAGAGCACGCGCTTTATTATGGAGGGTCCGCTGCAGATCTCACAACCCGCTGATGGCCAGTGGGTGAAAAAAGGCAGCAAGTCCCTCAAGTTCCAGAATGTTCAAAGCCTGCTAATGGTGCGCACGGCAGAAGGAGGGGGACGTGGAGACCAAACGGAGGCCTTCGAGACCGTGCAGGATGGTGTGCTGGTACTGATTAAAGATAAAAGTAGTGGCAAGTTTGCTGTACTGCGTGAGCCCATCCATCTGGCTAACTGTGTGGTTTCGACCGACCCGGACTGTGATGACACGTTCGAGGTGCTGGACATCCGACGCGAAGCCTTTGTTTTACGTGCCTCTGACAAATCACGTACGCAGCAGTGGTTTCGTCTGATTAAGAGGTACGCATGTGATCTGGGGCTCTGGAGAAAAAGACGCAACGCACTCCCTAATATAATGATCAACACGTCCCAGAGCCGCTCTTGAGACTTATTTACGCAACTTAAATCTggtggaaattattttaaaatatttaattgacaGTATTACATTATGGAAAACAAATGTTTGATGATttggccagaaaagtgcactTTCTATAGGTAGACACTGACATTCACAAAAAGGGGGAAAATCAGCTTTTAGTGGACCAAAATGAGAACGTGGTTGGGAACGTCACTGGCCACAGATTGTGCAATTTGCTATTGACATAAATGTTTTCAGCAATTATTTGTAACAGCATGAgtgaaaatatttgtttaaaaattatattgagAAAGAAAATTATCATTAGAAATCCTTTTTAACAAAGACGCACAAATGTGACAACTAGTGTAATGTGTGAAGACTGAGCCAGATTCCATATGTCGTTTTTTTCCAATACGATATGTCACAgccctcttcctctcttttcattagtctgaaaaatgacaaaatgttccATTCCCACTACCAGTGAAGCGTCCAAGGCCATTTGCGTAAGTGTCACTGTAGTTTCATTTTAAGCTATAACGAGCTTCTTGCGACATCTGATTTCTAAAATACCCGTATACCTGCATTATTATCACTGTGCTGGGGGAACAAAGCAGCAATAATTAACAAGCATATTGTAGCTACAGTAATGCTGGTTTTAATTCACCGTAATCCTTactgacacactgcagtaaGATAAACTTATAacaacatttgttttatttaaatatacagtagcaAGTCTTCTATCAGtcaattattttaattgctGTTGCCACACTAAAGGTAGTGGTGAAACTGCATCTGGTTATGATATAGTAGCAGTAACTTTAAATGTTGGAGTATCAGAAATTGATCTTCCAAAACCAAGAAATGCTGAACATTTGATAATTGATAAGAGAGAAAACCGCGTGCCTTTCATTTGATTGCCTACTGAAACGTCAGAGCCAGTCTCCCCCAATCCAATTAAATCTTATGAGAAAACTTATTGTTCTCTAAACTCCTCTCACCGTCTCCATCATGCTAATAGAAAGTCTCATTTCTGTTTAATGCACTTTAGTCTATGtggaaatatttgtttttattaaaagctttactctttattttttattttactccaAATTTTGTTCCAATGCTAAacacaaattatattttaaacatgcatTTGCAGTTGCATTTCCCTTATCAGTGTGCATAATATGAGACATAAATCAACTTAAATTGTAAAAcatgtatttgcatttgcatttttgtttacaGCAGTgtagtttcagtttcagtgccTAAACTTGTCAGATTCTGCCATATTAACAAAGTAATAGCAATCCTTACGTTTGCAATGGCACTTTCTCATCCCCATGCTACAAGCAGGATTTTAGGagggactttttttaaaaaggcatgTGTTTCAGAGAAAGTGTAAACTTGTGGAGGTGGTTGCAGACCCTTGCAATGTTACAAAATATTGCTAAGGACATTTTAATGCtggcaaaaaatgacatttcatgaCTTCAGTGTTTTCCTGTTGGCAGTGTTTGTAgttttcaaaaaagaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578163.1 lncRNA downstream 141790 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 293607 16074499 ~ 16076620 (-) False lmo7a
TU99103 lncRNA downstream 297156 16072840 ~ 16073071 (-) True G83474
TU99102 lncRNA downstream 297543 16072397 ~ 16072684 (-) True G83473
TU99082 lncRNA downstream 339484 16030534 ~ 16030743 (-) True G83457
TU99271 lncRNA upstream 2950 16409428 ~ 16409893 (-) True G83614
TU99680 lncRNA upstream 559033 16965511 ~ 16966173 (-) True G83953
TU99803 lncRNA upstream 720832 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 901091 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 917567 17324045 ~ 17324878 (-) True G84182
XM_026912694.2 mRNA downstream 7323 16353143 ~ 16362904 (-) True arl5a
XM_026911440.2 mRNA downstream 20985 16293892 ~ 16349242 (-) True neb
XM_026946587.2 mRNA upstream 23454 16429932 ~ 16457212 (-) True kcnj3a
XM_026912793.2 mRNA upstream 65581 16472059 ~ 16516287 (-) True galnt13
XM_026910878.2 mRNA upstream 156196 16562674 ~ 16614183 (-) False fmnl2a
XM_026910888.2 mRNA upstream 156196 16562674 ~ 16614183 (-) True fmnl2a
XM_026910895.2 mRNA upstream 157792 16564270 ~ 16614183 (-) False fmnl2a
TU99188 other downstream 149361 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 1293032 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1532834 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1816768 14552451 ~ 14553459 (-) False med14
TU96950 other downstream 3653558 12713199 ~ 12716669 (-) False hspbap1
TU99754 other upstream 621829 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3074642 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3162273 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3820250 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4729568 21136046 ~ 21144621 (-) False phgdh

Expression Profile