RNA id: XM_026912829.2


Basic Information

Item Value
RNA id XM_026912829.2
length 4933
RNA type mRNA
GC content 0.46
exon number 7
gene id sp3a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17371979 ~ 17381172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACTGATTGATAGGGCGTACGACCAATCGGAACCCAAAGTCTGAAGTAAGGCAGCCAATAGCGGGAGAGAAGAACGGCGGGACATCCTGTTCGTGACGCAAATTTTCACAGTCAACATCGGAAGCTCCACCTTTTGTGTTTCCCGCACCGTCaatcaaaatagaaaaaatagacTCGATTCAGCGATCGCAGCCCGCCTCCGAATAATATAATCATGCTTGGCGTGTAATTAAAtcgagattttttttctattaaagtAATTCACGTAATGACTGGTATGTAAGACTCAATACATTTGCATTAGACGCATTCCGCAGCCCTGTCTTAGctaagctaatgctaatgctggCTAAGTGTGTAGGTTTGGTTTGCTAATCTCTTTGCAGTTGTGCTAACTGTTAACATTAGCCAGTTAGCTTAGCCACTTCTGAATTTTCCGATTTGTGTGCAGATAGCAGCTCTGTTTGTGCTCAGTTTGTTGAAGTATTCTTTGTTGTGGTCGGAGAGTTGAGCTGGCAGTACGTCCGACTGAGCTGTTCTGCTTCGTGTCCGTGCACCGTGCCTGTGTACAGCGCCCAAACAGCCGGGGAGACAAGAGGAAATGGCTGCCTTAGACGTGGACAGCAGTCAAAGCGAGTTTCTGCAGCAAGATGGTAGCAGGGGAGACCAGGCCAGTCCGCCGTCGCCGCTCGCTCTGCTGGCGGCCACCTGCAGCGAGCTCGCCTCGCCCTCCTCCCGGGGGGAGAACAGAGCTGCCGCTGCCGGGGCTGCAGATTCTGGATCAGTGCAGCTAACAAGCTCATCAGAAAGATGGGATGGAGTCAAGGATGACTCAAGCATTGTGCAGCTGCCCAGTGGGGGCATAGTCACCTCCAATGGGCAGTATGTTCTTCCCATTCAGGGCCTTCAGGGCCTCCAGAGCCAGCCCATTTTATTAACATCAGGGACAGACTCCTCCGCCAATGCAGTGCCTAACATCCAGTACCAGGTTATCCCGCAGATCCAGACAACTGATGGGCAGCTGGGATTCTCCGCTTCAACGGTAGAGGGTGCCTCCCTGGCTCAGGATGCCTCAGGGCAGATCCAGATTCTTCCTGATGGCTCTCAGGCCATCAGTGTAGCCGGGACTGCCTCGGCTGGCATTCTCAGCAACAGCCCGAACCTCATGGCCCAGACTGGCCAAGTGCAGCAGATCCAGGGAGTCACTCTGGGAAGCTCAGCCTTTAACAGTCAGGGGCAGGTGGTTGCTAACGTGCCTGTGGGTTTGCCTGGGAATATTACCTTTGTGCCCATTAACAGTGTAGATCTGGACTCACTAGGGCTCTCCGGGGCACAGACAATAGCCACGGGGCTGACCGCTGATGGACAGCTAATCATGACCAATCAGACGGTGGAAAACACAGAAGGCTCAGAGAAAACAGGAGAACAGCTATCACAGCAAACACTAGTGGTCAACAACACTAATGCAGCAGCAGAGATGTTTGTGCCTACCacatcttcctcatcatcatcgtcatcttCGTCCTCGCAGTTGCCTGCCAGCACAATCGATGGCACGGGTGTGCTGACGCAGGGCACGCCTGAGCAGACTGAAGGATTCCTTGCTCAGAGCCAGGTGCAGGTGTCCACAGGGCAGCAGGTGATCCAGCTGCAGCAGGTGCCACTCCAGAGCAGCGACGGGCAGCTGGGCCAGCAACAGATAACCACCCAGGGGCAGCAGCCTCTCCAGAACGTCCAGCTCATCAACCCAGGGACCTTCCTCATTCAGGCGCAGACCGTCACACCATCAGGCCAGATACAGTGGCAGACCTTCCAGgTTCAGGGTATTCAGAACCTCCAGAACCTGCAGCTCCAGACAGCCCCAGCCCAACAGATAACGTTAGCCCCAGTACAGACCCTCTCTATAGGGCAGGGTGCCCTAAGTACCACTCCTGTCAGCATCAGCTCTGGGCAGATTCCCAATCTGCAGACGGTCACAGTTAATTCGGTGGATCATGCGGGGCTCCAGCTCCAGGCTGACGACACAGACAGCCCTGGAGATATTCGGATAAAGGAGGAGCCAGACTCAGAAGAGTGGTCTCTTGCTGGTGACTCCACTCTGAATACTAATGACCTGTCTCACCTGCGTGTGCGCTTAGTAGAAGACGAGATGGAGGGTCTGGGCCAGGAGGGCAAACGGCTGCGCAGGGTCGCCTGCACCTGCCCCAACTGCAAAGAGGGAGGAGGAAGGGGCGCCAACATGGGGAAGAAGAAGCAGCATGTATGTCATATAGCAGGCTGTGGGAAGGTGTACGGGAAGACATCTCACCTTCGAGCTCACTTGCGCTGGCACTCAGGAGAGAGGCCTTTTGTCTGCAACTGGATGTTCTGCGGCAAGAGATTCACACGCAGCGATGAGCTGCAGCGACATCGGAGAACACATACAGGCGAAAAGAAGTTTGTGTGTCCTGAGTGCTCAAAGCGCTTCATGCGAAGCGACCACCTGGCCAAGCACATAAAGACGCATCAGAAGAAGGGCAGCGGTGGCGCAGTGGTGGCAAGCATGGAGACCTCTGCCTCCTCTGACAGCATCATCACCTCAGGAGCTACCACACTCATCCTCACCAACATCCAGCCAGGTGCCGTGCAGGGCCTTGCTACCGTTAACGCTACTGTTAACACGTCCAACTCGCAGGAGCTGCTCACTACAGCAGAGATCCCGCTGCAGCTAGTCACCGTCGCAGCCAGTGAAGCTGCAGAGTGACGCATACACACAGGAGCTGAGCAACTAACAGAGAGGACTTTCTCAATTGTCAGGAAAGAAACTGCTTCACAAGGATTCAAGTAAACTTTTTATCAGACTGCCAAGGTTATGTTGCTTTGGGCATAGTGTCATTATTATCTTCTCCTATCTCTTCCTCCTGGATATCAGTTTGACCACAAGACTCCTCTCCCTCAAATTTATCCTGCTTTTTATACCCCCACAGATTATTCTCATTTACGTAAATATATCCATTTACGTAAATgcacatatataaaaatatattttacaaatatagaATATCAATTTATGTTTGTCTGCAGTTTTTTTATGGCAAGAATGGAACAGAAGAAAATCGTCGAAAGTGGTTTCCatataaaaaacactgaaatgccTTATTTTGTATCATATTCATGTTGTGTACAAAAGTAGAGTTGCTGACAAGCTTTAAAGCAACTGTATTTGTTTGAATGGGAGTAACCTTTATAAAGGAACCTAGGTCTGGTCAACGGGAGTGATGTTAATCTAATGTGGTGGCTAGTTTAGGGTATGTTGTGGCGTTAGTTGGCCGCACTATAAGGGAGGATGTTCAGGCTAGAACATTAGAATGAAGTGTGCCACTCTGGTGCTGGGCGTTATGAAGTTCTTCATGTCCAAATGTGTCTTTAATGTACGTGTTTCTGATGCTTTTCTCTGAAAACAtgcatatataattttttttttcaatgtggtccttttattttatttagtagaAATCAAGGCTCTGCGAAGCTCTTTCTCTTTAAACTGAAGCGTTGTGaagaaaattataaaaatgaaaaacaatcagtgtaattaaaaccctttttttttttccttcttcttcaaCCTCTTACAGTTGATCACATGTTATGCATTTGTTAAGTCTTTTTGAGCAAGACAATATTTATATGAGGCTTTGCATAGTAAACTGGTTTTGTGGTGTCTACATCTCttaaataggtttttttttttttttttttttttttttttttttttttaattttttaaatatgtataataattccaGTATGTCATTTTTCTAAGGCTGAACTATCTAAGCTGAATCATTATCAGAATCATTTGATATGTAATGGGCAGATTTGTGGTCTAGAAATTGGTGACATGTCAGTGTCGCATGAAGAGGATGTGATTTGTCTGGATGTGCCTGGAGTTTTTTCTCtctgggttgtgtgtgtgtagagctgtACCACATGGTGATCCATTAGGAATAAGGAGTACTCGATTACAGGTGTGCTGTGCCACTGGTGTTAAAGCTGTTTGGACCAAATTCAATCAAATCACTTTTAAACTGCTCAAGAGACAAGGACCGATTCTACAAACCACCATGTAACAACAAAAAACGTCCAGTTTAGTTTTAGGCCAGCCAGTTCTGTACAGGAAACACAGAATTTGAACCTGTATCGAGATTTTTAGCTTCGCGATGGTTCTGATGGGTTCTGCAGTAATTCGATTGACTTTGTTCTGATCTGCCATAGCCATGTTAGGAGGAGGCTGGGGTACTCCTGATTTGAGATCCTGcgcagagaggaaaaaaatgtccattttcATGTGCAAATACACTTGTTTATTACTGGTATATACTCACAGTTTGATAATGAACTTTTTTATAAAGAGAGCATAACTCTTTTATATACTTCACAGGTTGCTGAAGGACATATTTCTTGCCCTCAGTATGCAGTTTGTTCTTCAAGCGATGGTGTAGGAATATTTCCCTCTTTATCTCCAGGATTGTTTTGCACTTTCATATGATGGATTATTCCATGTAATCCAGACATGAATTATGAGTTCAGTTGCCAGTCTGTTTTAGGAGTTTCAGCTATTAAGGACAAGAAATTTAAACATGCTAATGATGATCCATGCTAAACTACCCAACCTTGCTGAAACGGATAACGTCATTAGTTAAGTGTAATTGATGAAACActattttgttttctgaattattttttttttcctatttcctTCCtactatttgcatttttaatatgttgCCCTAGTTTGTGAGGTCAAATATAATTTTGTTCACTATAAATAGCATTGTAACGTCTCTTGTATTGTtatttggtctttttttctgaaaaagctTCAAACTATTGTACAATGCCCACTTTTGAGGGCAGctttttatttcacactaaaatgactaaaaagaA

Function

GO: NA

KEGG:

id description
K09193 SP3; transcription factor Sp3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99960 lncRNA downstream 25708 17332492 ~ 17346350 (-) True G84189
TU99953 lncRNA downstream 47180 17324045 ~ 17324878 (-) True G84182
TU99946 lncRNA downstream 60103 17307569 ~ 17311955 (-) True G84177
TU99803 lncRNA downstream 243378 17127310 ~ 17128680 (-) True G84061
TU99680 lncRNA downstream 405885 16965511 ~ 16966173 (-) True G83953
TU100005 lncRNA upstream 10513 17391684 ~ 17391947 (-) True G84227
TU100003 lncRNA upstream 26047 17407218 ~ 17431431 (-) True LOC117597450
XR_004578290.1 lncRNA upstream 27578 17408749 ~ 17431322 (-) False LOC117597450
XR_004578291.1 lncRNA upstream 27578 17408749 ~ 17431322 (-) False LOC117597450
XR_004578289.1 lncRNA upstream 27578 17408749 ~ 17431322 (-) False LOC117597450
XM_026912996.2 mRNA downstream 122226 17216721 ~ 17249832 (-) True ppp1r9ala
XM_034304897.1 mRNA downstream 122226 17218007 ~ 17249832 (-) False ppp1r9ala
XM_026912998.2 mRNA downstream 122227 17216721 ~ 17249831 (-) False ppp1r9ala
XM_026912997.2 mRNA downstream 122227 17216721 ~ 17249831 (-) False ppp1r9ala
XM_026913163.2 mRNA downstream 162265 17176681 ~ 17209793 (-) False dync1i2a
XM_026913145.2 mRNA upstream 55987 17437158 ~ 17443522 (-) True cir1
XM_026912530.2 mRNA upstream 68709 17449880 ~ 17464276 (-) False gpr155a
XM_026912529.2 mRNA upstream 68709 17449880 ~ 17464275 (-) True gpr155a
XM_026913156.2 mRNA upstream 84517 17465688 ~ 17472291 (-) False wipf1a
XM_026913157.1 mRNA upstream 84517 17465688 ~ 17472217 (-) False wipf1a
TU99754 other downstream 332215 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1151192 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2294863 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2534665 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2818599 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 2099949 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2187580 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2845557 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3754875 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3754875 21136046 ~ 21144621 (-) True phgdh

Expression Profile