RNA id: XM_026910153.2


Basic Information

Item Value
RNA id XM_026910153.2
length 6933
RNA type mRNA
GC content 0.50
exon number 52
gene id col4a1
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12543779 ~ 12589550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGATGCGGACAAAACCTGTAGATTAGGCTCCAGAGCAAAAAGTCGACTTTTAAGGAGGGAGATCAGCATTCGCGCTGTGCTTGTTGTACTGTCTGTAGCGTTGTGCGGGGCAGCTGCAGGCGCCATGCGCGTGCTCAGCGGCTCGCTGCTGCTCGTAGCAGCCGTGTTGTTCAGCGCAGATCCGAGCAGAGCAGAGGGGTGTTCAGGCTCATCATGTGGGAAGTGTGACTGCAGCGGTGTAAAAGGGTCAAAGGGTGAGAGAGGTTTACCTGGTTTACAAGGCAATATGGGATTTCCTGGTATGCAAGGTCATGAGGGCCCGCAAGGGCCAACAGGACCAAAGGGAGATCATGGTGAGCCAGGGGCTCATGGAATGAAAGGAATACGTGGTCCTCCTGGTTTACCTGGTATTCCGGGAATTCCTGGGCACCCGGGCATCCCAGGTCAAGATGGCCCACAGGGACTGCCGGGCATCCCTGGCTGCAATGGAACAAAgGGGGATCGAGGCAGAGATGGAATCCCAGGCATACCAGGATTGCCGGGACCACCAGGTTTTCCAGGTGATCCAGGAGTGAAGGGTGACCCAGGCGGTGTTATTGGTGGGTTTATTCctcagaaaggagagagaggctTTTCAGGAGCACCAGGATCGCCAGGGCCACCAGGACATGCTGGACCACATGGACCAGTTGGCCCACCAGGACCAGAAGGGCCTCGAGGATATACTGGTGAACCCGGCCCTCCTGGCCCTCCTGGTGATAAGCTTACTTTTGTTGGTCCGAAAGGTGAAAAGGGTGAAAAAGGCCTCACAGGTCCACCAGGGCCCCCTGGAATTCCCAGAGAAGTTGAAGGAAGCATCACGGTTTCTATCCCTGGAGAAAAAGGTGAAAAGGGGGCGCCCGGACAAAAGGGTGACATGTGTTCACCATATCAAGCAGGAATCAAAGGTGAACCAGGACCTCCAGGCCCACAAggaaaaataggaaaggATGGAAACAATGGAGCTAAGggggaaaaaggtGAACTTGGTATGCCTGGATTTTCTGGCTTAAAGgggcaaaaaggagagaaaggacCTCCAGGATATgctGATGGTGCGCCCGGCCCTCCTGGTCCTCCAGGCTTACCTGGAGCAATGGGAGAGAGAGGCCTCCCTGGGTATACTGGAGAGCCTGGTCTTCCAGGCAAGAATATTGTGGGTCCTCCTGGACATCCAGGCTTTCCTGGAGAGATTGGACAGAAAGGAGACAAAGGTGCTGATGGAGAGTCTCTCAGAGGACCCAAGGGAACTGATGGACCTCCTGGTCAACCTGGACCCCCAGGGCCATTAAATGAGGAGTGTGACGTTGATCGTGGAGAACCAGGTCCTCCTGGACCTCCTGGGTTGCAAGGAGAAGTGGGACAGAAAGGTGACAGAGGAGACACTTGCACACAGTGCTCTGCCAGTGGACCTCCAGGTTTACCTGGTATTCAGGGGCCAAAAGGAAATCAAGgtTTCCATGGACAACCAGGTAGTAAAGGAGAAAAAGGTCAGCCTGGCACTCAAGGAGCTCCTGGGTTTCCGGGGAACGACGGCTCCCCAGGTTTGATTGGTGCTCCTGGGGCAAAGGGTGAACCAGGTGACATCTATATAACCCCAGAGCTGAAGGGAGAGAAGGGCTCACCTGGGGTTCCTGGCAGTAGGGGATTACCAGGCATAGATGGATTACCTGGGAAAGATGGATGGCCAGGTCTACCAGGACCGAAAGGAGAGCCAGCTAGAGTCGGTATTAAAGGTGACCGTGGCCTGGATGGCGAGCCAGGGAAGATAGGACCCACTGGTGAGAGAGGACCCCCAGGTCCTTCTGGAATCGGCCGCCCTGGAGAGCCTGGAGAAAAGGGCAGTCAAGGATTTCCCGGTGCTCCAGGAAGGCCAGGAACGCCAGGACCTAAAGGTGAACCTGGAAAAGGTGTAAGTTCACCAGGACCTCCAGGTCCACCAGGACCACGTGGTGAGACAGGATTGCCTGGCCTTCAAGGTGAAAGGGGTTTTCCTGGAGATCAAGGACGGGCAGGATTACCAGGTGAAAAAGGTGACCCTGGCCTTCCAGGAATCGGATTTACAGGTCCACCAGGTCCAAAAGGTCATGCCGGTTTACCAGGTGCACCAGGATTCCATGGAGACCCTGGCAATCCAGGTCAGGACGGTTCTCCTGGACACCCAGGAACTCctggacaaaaaGGTGAACCTGGCATTGGCCTCCGAGGACCCAAGGGCTCTATGGGTCCGCCAGGAGTTCAAGGGTTTCAAGGCGAAAAGGGTAATGTAGGAATGCCAGGAGTCCCTGGAACCGAAGGACGAACTGGACCACCTGGTCCTCAGGGTGTAAAAGGTGAAACTGGCCCTCCTGGATTCCCAGGTTTCTCAGGACCACCTGGACCCCCAGGACCCGGTGAGCCTGGACTACCTGGACTGATGGGACCCCCTGGAGAACCTGGTCCCTTAGGTCGTATTGGtgaaaagggagagaaaggtCCCCAAGGTGTACCTGGTCCTCCAATGCCTGGTCCTCAAGGTGAGAAAGGCACCCCTGGTTTTCCTGGATCACCAGGGCCTAAGGGCTTTCCAGGGGAACCAGGAAGTCCAGGTATAGACGGAATCCCtggagagagaggtCCCAAAGGAGACATCGGAGTAATGGGAATTCCAGGGTCACCTGGACAACAGGGTCAACCAGGAGCCCCTGGAACCATTGGACCAAGAGGTGACCCTGGTGTTAGTGGGCCTAGGGGAGAGTTTGGTGAACAGGGCCctaaaggagagagaggagatccTGGTCTTCAAGGACCACCTGGTAATATGACTGATGTGGAAATGGAGCATATGAAAGGAGAGAAGGGAGACATCGGAGACAGAGGGGATCCAGGCCCTACAGGAGAGAAAGGGATCCCTGGATCACCTGGAGATCCTGGAATACCTGGAAAGGATGGAATGCCTGGTTCACCAGGAAAGCCAGGTGAGAAAGGTGATCCAGGACTTCCTGGAAAACCAGGACCAGATGGACAGCCTGGAGTAAAAGGCAGCATAGGAGAAATGGGATTGCCAGGATCATCTGGGCCAAAAGGCAGTAAAGGTGTTGCTGGGCAGCCTGGCCATCACGGGTTTAAGGGTGATCCAGGAATCAAAGGTGAAAAGGGAGAAGTAGGTCTGCCAGGAATAGGAATTCCTGGCCTCCCTGGTGAGAAGGGTGAAATGGGCCAACCTGGTTTTCCTGGGGAGTCTGGACAAAAGGGAGTGAAAGGTTCCATGGGAATCCCAGGCACACCTGGAACAGCAGGGCCAAAAGGAGACATAGGCCCAATTGGTTACCCAGGTAGCCCTGGGGTACCAGGTGAAAAAGGAGCCATTGGGTTACCTGGATTACCAGGGCAGCCTGGTCTTGAAGGACGGTCAGGTGAACCTGGTCTGCAGGGTCCCCAAGGGTCACAAGGGAAGAAAGGAGAGCCAGGAACAGATGGAGTCCCTGGAGCTGCTGGGGAGAGGGGTGAACCAGgcTTACCTGGTAGAGGCTTTCCTGGAACCCCTGGGCAGGCAGGCGAAAAAGGGGAAAAAGGTAACCCAGGTCCCCCTGGCATGCCTGGAAGCCCTGGTGTTCCTGGAACCAAAGGAGAGAAAGGCCTGCCAGGATACCAAGGTATTCAGGGTCGACCTGGTGAAAGAGGACTACCAGGGCTATCAATGGAGGGGACTAAAGGGGAGAAAGGAGCTCAGGGAGAGCCTGGAGAGCCAGgGCAGACTGGTGCTCCAGGTCCATCAGGTGTTCCAGGTAGTCCTGGAGCtaaaggagagaaaggagaaaaaggtTTCCAAGGCATACAGGGTCCTCATGGTTTGAAAGGAGATAAAGGTTTCACTGGCCAACCTGGTGAACCTGGCTTACCAGGCTATCAAGGACTAAAGGGTGAAATGGGAGCTCCGGGCCTTCCTGGCTTCCAAGGATTAAAGGGTGAGAATGGATTGACTGGTTTCAAAGGAGAGATTGGTGATAGAGGATTTCCAGGGGCTAAAGGTAATGATGGCCCTCCTGGACCTCCAGGACCCAGTATCTTTATAAAAGGAGACATTGGTTTGCAAGGACCACAGGGTCCCCAAGGTTTACCAGGGCCTCAAGGGAATCCTGGACCAAAAGGACAGCAAGGATTGATTGGTATACAGGGTATTAAAGGAGAGGATGGGGTACCAGGATACAATGGGTTTCCGGGCGCTAAAGGAGAACCTGGGCATACTGGACCCTCTGGATCCAGAGGATATCCAGGCCCCCCGGGTCCTGATGGTATCCCAGGTCAGGTTGGCCCTCCTGGACCCTCTTCCATGGACCATGGCTTCCTAGTGACTCGGCACAGTCAGTCCATCGAAGTGCCCCTGTGTCCACAAGGCACCACTCTGATCTATGATGGGTACTCCCTCCTGTACGTCCAGGGAAATGAGCGATCCCATGGCCAAGACCTGGGTACGGCCGGTAGCTGCTTGAGGAAATTCAGCCCCATGCCATTCCTCTTCTGCAACATCAACAATGTGTGTAACTTTGCTTCTCGTAATGACTATTCCTACTGGCTCACATCTCCTGAGCCCATGCCTATGAGTATGGCTCCTATCACTGGCGAGAGCATAAAACCTTTCAtcagcagatgtgcagtgtgtgaggctCCTGCCATGGTGATTGCTGTGCACAGTCAGACTGTAGCCATCCCACCCTGCCCTCACGGCTGGATATCTCTGTGGATTGGTTATTCCTTTGTCATGCACACCAGTGCAGGTGCTGAGGGCTCTGGTCAGGCTCTGGCCTCTCCTGGCTCCTGTCTGGAGGAGTTCCGCTCTGCTCCCTTCATTGAGTGTCATGGCCGCGGCACCTGCAACTACTATGCTAACTCCTACAGCTTCTGGTTGGCCACCATCGAGGATAATGAGATGTTTAGCAAACCTGTCCCCACCACACTAAAGGCTGGGAATCTGCGAACTCACATCAGTAGGTGTCAAGTGTGCATGAAGAGGACTTAGCCTGATCACACTCCTCCTTCTGCATTTGGCTTTTATGTTCCagttttacaaaagaaaaacagcatggTGCTacttcacagagagagagaggagatggacTTAGAAAGTGTTCTTTCAGACTTAAGAATGCTGATCGAAATGAAATAAGAAGGTCCAGAGCGACGGGACCCCAAAACCTGGTGCCTCTGCTCCATATAGAACACTACATTAATATCTTCATTGTCTTTCCTAAATAAATGACACCTGTTTGCAATTGCACTGAATCTATTAGTAAACAGGCTGCCATTTTGAAAACAAGTCTTCTGAATCATGTTTTAATGAATACAGCTATTCTCTTGGTTCAAATGCTAAGTACTGTTTTGCCCAGTTTACTTAACTACACCAAAAATAAGTATCCTATCTCTTTTTTCACTCAGTTTGTCATTATCATATACTAACTTCAGAGATTTGGGTTTTCTTTCTAGTAATACACTATAAGTTATGTCTGTCCTTTATGTAGTCCAGCAGCCAGGATGTACTTTGAGCTCTGTTGTAAATATATAgctttgtttaataattaacattttgtcaACATAATCTCTTCAggtaaatgcatttaattttgtcAGAGTTATTTATGAAAGCTATAAGAGTACAATGAGACCAAGGGCGCATTTTGTATAAGGCCATTTCGACTCTGTTGACCAAGTCACAATATAATCTGCAATTTGATTAAGGCACATAATGGTGAATTGTAGTATTTAGCACTATATGCTTTAGTAGGCATATATCTGTGTATAGCTTTGAAATGTGTGATTATTAGTTCGGTGCCAGGGAGTGCAGTGGGGATAAACATGTTTACATCGACAAGCAATATCAGCATTTTCGCAAAcagtgtgcactgtgtgtgtgcattttgcCATCCCTCAGTGGTCATACCTCCCTATACTGAGGACATTTTCCCACTTTGTCTGATCAGGTCTCAATCATACACACAGCAGTGTATCTCAATGGTATGAGTCCTTTCAAGACACATAGCTTCTTGAGCAATTTTAAGTCAAATACTTTTGATACATGTTCTCAACCTAATGGGTAGAttccttgattaaaaaaaacactcttgcATTCTTCACTAATCTGAAGCTgaacgtgtttacatgtgactagCTGCACTTTCCAAGGCCAGCTTTAAAAGTTATCCTATGCAGGTGATAATAAAAACTGACTAAAGTTGCCATGCTCTTTTCATCAATCTTCAACAATAATGTGGCTTGCTATGTGTCATCTGTCTGTGGCCAAACCTTTTGTTTGCTCATCCTCTGCAAGACATTAGATTGTTGTTCTTGCTAGACTCCATGTGCCTCAAATTCCTTTTGCTGTCTTGAGTGGTAATTGAATGCTAGACCAAAGAATATGCACATACCTAGTTTTACACTGAATATACTTGactataaaatgttatatttttcagGGTCCCCTATAAATTCCACAAGGAATATATTCAGTTAAAACTATGCCACTGTTTCAGTTCGCCATCTATGTATTCTAAAATTATCTTTAATGAATTTGAGGCTGTAAATCCTCATAAATTACAAGAGACTTCCTCTAGTGTTTCCGCATTTGTTTTATAAAGATTTACTCTAGAGTGCCCATAAAATGCTTATCCTGGTTTATCTCACACCAACTGATTGTATTCTTTCATGAAATGACACTGACCCCACTTACAAGTTATTGTGGTTTGGGGTTTTTGCTGGTGTTGTCTTCCCTGTGAATGTTGAGTTGCAGTATTAAAAGCACTTGCTCACCACTGTGATTCATGGAAGCATACAGAGATGGATGGGGTTTTCAAGCACAGcttttttgtgtctttctcCCTTCTGTATTGAAAACATACAATAAATCAGTTTGTCCATTT

Function

GO: NA

KEGG:

id description
K06237 COL4A; collagen type IV alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96773 lncRNA downstream 36091 12482679 ~ 12507688 (-) False irs2b
TU96731 lncRNA downstream 109207 12434367 ~ 12434572 (-) True G81520
TU96617 lncRNA downstream 247144 12296347 ~ 12296635 (-) True G81413
XR_003404757.2 lncRNA downstream 333555 12208009 ~ 12210224 (-) True LOC113546902
TU96436 lncRNA downstream 428420 12115107 ~ 12115359 (-) True G81243
TU96832 lncRNA upstream 64786 12654336 ~ 12655862 (-) True G81612
TU96858 lncRNA upstream 110700 12700250 ~ 12700493 (-) True G81634
TU97040 lncRNA upstream 331366 12920916 ~ 12923093 (-) True G81802
TU97184 lncRNA upstream 507159 13096709 ~ 13099204 (-) True G81932
TU97263 lncRNA upstream 625820 13215370 ~ 13250509 (-) False gli2a
XM_026910761.2 mRNA downstream 47328 12482661 ~ 12496451 (-) True irs2b
XM_026912570.2 mRNA downstream 453265 12085685 ~ 12090514 (-) False pdzk1
XM_026912569.2 mRNA downstream 455159 12085115 ~ 12088620 (-) True pdzk1
XM_026912464.2 mRNA downstream 494078 12015445 ~ 12049701 (-) True st6gal2a
XM_034304859.1 mRNA downstream 548113 11966494 ~ 11995666 (-) False uxs1
XM_026912674.2 mRNA upstream 67503 12657053 ~ 12661141 (-) True LOC113525968
XM_034304681.1 mRNA upstream 123515 12713065 ~ 12728037 (-) False hspbap1
XM_026912186.2 mRNA upstream 123515 12713065 ~ 12728037 (-) True hspbap1
XM_026911676.2 mRNA upstream 186676 12776226 ~ 12873123 (-) False sema5ba
XM_026911691.2 mRNA upstream 186676 12776226 ~ 12873123 (-) True sema5ba
TU95687 other downstream 1508218 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 1572622 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 1934737 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 2889324 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 2974659 9568555 ~ 9569120 (-) True G79826
TU96948 other upstream 123649 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 123649 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 1962901 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 2238236 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 2473875 15063425 ~ 15077195 (-) False dcaf6

Expression Profile