RNA id: XM_026910878.2


Basic Information

Item Value
RNA id XM_026910878.2
length 4876
RNA type mRNA
GC content 0.44
exon number 26
gene id fmnl2a
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16562674 ~ 16614183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGGAACGCAGGGAGTATGGAGCAGCACACCGACCCGAGAGGACACAACATGCCGTTAAAACTGCCCATGCCGGACCCGGGGGAATTAGAGGAGCGCTTTGCGGTTGTTTTGAATTCTATGAATTTGCCTCCAGACAAAGCCCGGTTACTGCGGCAGTATGACAACGAGAAGAAGTGGGAGCTCATCTGTGATCAGGAAAGATTCCAAGTGAAAAACCCTCCTCACACATATATCCAGAAGTTGAAGAGTTATCTGGACCCAGCAGTCACCAGGAAGAAATTCCGCCGGAGAGTTCAAGAATCCACTCAGGTGCTGAGAGAACTAGAAATTTCATTAAGGACTAATCACATTGGATGGGTGCGTGAGTTTCTAAACGAGGAGAATAAGGGCCTGGACGTGTTGGTGGAGTATCTCTCATTTGCACAGTATGCTGTCACATTTGATGGTGATAGTTTTGAGAATGGCACAGACAATGCAATGGACAAGTCTAAATCTTGGAGTCGCTCTATCGAAGATCTCCACAATCTACCCTCTCCGATTCCAGGAAGCATCAGCAGAGCTGGGAGACACTCTACATTAAGATGTAATACATTGCCCAGCAGAAGAACATTGAAGAATTCGAGATTGCTGTGTAAGAAAGACGACGTTCACGTCTGCATTATGTGCCTGCGAGCCATTATGAACTATCAGtATGGCTTCAACATGGTTATGTCCCACCCTCATGCTGTGAATGAAATTGCACTAAGTCTGAACAACAAGAACCCCAGgacGAAAGCGCTAGTACTGGAGCTGCTGGCTGCTGTGTGTCTAGTCAGAGGGGGGCATGAGATCATTCTCGCTGCTTTTGATAACTTTAAAGAGGTTTGTTCAGAAAATCAACGCTTTGAGAAGCTGATGGAGCACTTCAAGAATGAGGACAATAACATCGACTTTATGGTGGCCTGTATGCAGTTCATAAACATTGTGGTCCACTCAGTAGAAGATATGAATTTCAGAGTGCACCTACAATATGACTTCACGAAACTATGTTTGGACGAGTACCTGGATAAGCTGAAGCACACTGAGAGCGATAAATTGCAGGTGCAGATCCAGGCCTACCTGGATAACGTGTTCGATGTGGGAGCTCTGTTAGAGGATGCTGAGACGAAGAACGCGGCGCTGGAACGagtggaggagctggaggagagcATTTCTCATATGACAGAGAAGTTACAGGACACAGAAAATGAAGCTATGGCAAAGATTGTGGAACTGGAGAAGCAGCTAATGCATAAGAATAAGGAACTGGACTCTATACGGGAAGTCTACAAGGATGCTAACTCGCAGGTGCACACGCTGAGGAGGATGGTGAAGGAGAAGGATGAGGCCATTCAGAGGCAGTGCAATCTGGAGAAGAAGATTCATGAACTGGAAAAGCAAGGAACCATCAAGATCCAGAAGAAAGGAAATGGGGATATTGCCATCCTGCCCTCTGCTCCATCTACTAACGGCCTGCTGGCGGGCACGGAGGGTGTGATGGGGGTACCCGGGGGTGCCATGGTGGGTCCTGTGGGACCGAGTAACGGTGTAGAACCGGGCATGTCCATGCCACCACCTCCCCCTCCGCCACCGCCTATGCCTGCGTCACTACCAAACGGTCCATCAGCTGTGCTCGAGccaccccctcctcctcctcctcctccaccaccgcCCCCTCTTCCAGGCTCTGGCATCGGTGTGCTGGAATCTTCCCCTATGCCCCCACCTCCACCACCCATGGCACCACCTCTACCAGGCTGTGGATCCCCCACTGTAATCTTCAATTCAGGTCTCGCAGCTGTGAAGATTAAGAAGCCAATCAAAACGAAATTCCGAATGCCAGTGTTTAACTGGGTGGCACTGAAGCCCAACCAGATCAATGGCACTGTCTTCAATGAGATCGATGATGAGAGGATACTAGAGGATCTGAATGTAGATGAGTTTGAGGAGATATTTAAGACAAGAGCTCAGGGCCCTGCTATTGATGTCACTTCTAGCAAGCAGAAGACCATCCAGAAGGTTCCTAATAAAGTTTCACTACTGGATTCCAACAGGGCCAAAAATCTGGCCATCACACTCCGAAAAGTGGGCAAGACTCCGGAGGAAATCTGCAAAGCAATTCAGATGTTTGACTTGCGGATGTTGCCGGTGGactttgtggagtgtctgctgCGCTTCATTCCCACAGAGCCCGAGGTAAAAATGTTACGGCAgtatgagaaagagaaaaagccaCTGGAAAACCTTACGGATGAAGACCGCTTCATGATGCAGTTCAGCAAAATCGAACGCCTCATGCAGAAGATGACTATTATGGCATTTGTGGGGAACTTTAGTGAGAGCGTGCAGATGCTCACTCCGCAACTGCACGCCATCATCGCAGCATCTGTGTCCATCAAGTCTTCACAGAAACTTAAGAAAATCCTGGAGATTATATTGGCTCTTGGGAACTACATGAACAGCAGTAAAAGAGGGGCAGTGTATGGCTTTAAACTTCAGAGTTTAGACTTGTTAATAGATACCAAATCAACAGACAGGAAGATAACACTGTTGCACTACATTGCAAATGTAGTGAAGGAGAAGTACCAGCAGGTGGCACTGTTCTATAACGAGCTCCATTATGTGGAAAAAGCAGCAGCAGTCTCTTTAGAGAATGTGCTGATGGACGTGAAGGAGCTCCAGAGAGGAATGGATCTAACTAGGAGAGAGTATAGCATGCATGGCCACAACACGCTGCTCAAAGACTTCATACATCTCAATGAGAGCAAGCTCAAGAAATTACAGGATGATGCCAAAATTGCACAGGATGCTTTTGATGAGGCAGTAAAGTTTTTTGGGGAGAGTTCCAAAACCATGCCTCCATCAGTGTTCTTCCCTGTGTTTGTGCGCTTTGTGAAGGCATACAGGCAAGCAGAGGAGGAAAATGAGCAGAGGAAAAGGCAGGAGCAGATGCTGATGGAAAAGCTGCTAGAGCAGGAGGCCATGGAGCAGGAAAATCAGAAGtCTCCTTCTCATAAGAATAAACGACAGCAGCAGGAGCTGATAGCTGAGTTGAAGAAGAAGCAAGTGAAGGACAGTCGGCATGTTTACGAGGGAAAAGACGGGACCATTGAGGACATTATCACTGATCTAAGAAACCAGCCTTACAGGCGCGCTGACGCGGTGAGGAGGAGTGTCCGGAGACGTTTTGATGATCAGAGCTTACGGCCAATCAACAATGCAGAGCTGGTGATGTAACGAAGGCAGAGTGGATGTGATTGGTTGGGATTGGAGTGGCTGAGAGATTGTCAgcctctctctgtgtgaaaaGGACTGATGAAGAATTGAAAGAGTGAGGAAGTTTGTCCTAAGGGCCAAAAGCTCAAGCTACTTTTGACCAAGTGCCTGAATTTAACATTTGTGTGATATtgtctttttacatttattatgtattgtattatttCAAGCAATAGGAACTTTTGCTCATTTACCACAGTGTCACTTGTAAAACTGGATATGAACATTATTTCCATACAGATGGAGATACACTAGTATGGAAATCCATAGTGAACTCGTACATTCCGGTAGTAATTACCATATTGCTTTTACTGCACAATGTTGTCCAAAAACACTTTTTCCTATATGTGGACAAGGGCTAGGTGTATTCTTAAAGATTACAGGCATGTTGAGCTTATTGCAAATCAAAAAGGAATGGAAAGGCTACGTAGCATTTTTGAATGACAACATGGCAGGTTTTATGAAGaccagttttattaaaaatgatagaAGGTTTGTGGAGAAGTATTAATGGAAACGGTGAAAGGCTGTGTAAAGTAGATGGTTCCAAGTTAATgtgaaatgtatataatgtaagcATTGTCACTCAGCAGTGTTAACAGACCAAAATCCAATCAGCTCACAATTACATGAAAGCATTCAAATATTTGTCATGCCACTATCTCCAAGCTATATCACAGTAACGTGACTAATAAAGTTGTGCCCAAGTGCCCCTCAGCTTTTAGTGAGTAGCTGACCTTCAGTGGGAAGATACAAAATCTGTAGCAGATGGACTGGATCCAATATTCAGGACTGTTTTAGTACAATTACAGTATaagccaaagaaaaaaaagaccacCACCTCGGACACCTGATTCACCATTTGTGAACATTCTTTAAAAAGTACTGATGCAGAGGCACTTGTGCTGTGTCTCAGCTAACACATCTGAAGTAGATTATTCAACCACTGAAGCCAGCCTTTCTCCGTATGGCTTATGCAGACCACTCAACTGAGTGCCACTTCTTTTTTTGGCTTCCAGCTCTATGTAAGAAAAAGCCTAGAAACGctttttaattgtacagataTTTTTGCTACAAAAtggttgcatttttaaaaaaaaaaaaaaaaaaaaccttcttaaCCTTCATTAGCATAAGGTTAATATTGTACATATTGATTTCATCATCCTTTTACTCCATTTGAATGTTATTTTAActtatagttttgtttttttccattttgtgtatttaattaaacaaaaacatgaatttgTCGTATCTTTGATAAAGTATGTAGCAGAGTTCTCAGATTTTACGCTTGCCTGGCAGTATTAAAGGCAATAGAATAACTGGCACAATCTGACACCACATAACGCATCACTAAGTAATACTGACACGTCTGCCTGTATGCTGCAGTCTCATGTCCTTTATGCATTCCATCTATAGACCAATGGATCAAACTGGCATGCCTTCTTGTCCTCTAATCAAAAATGTATCTTCTGGCATTGTGTTGTTATAACAGAATTTGATTTGAATAACTCATTGTTTTAGAGACACAATTCAATGCCAATGATTGAATAAACTATTTACATAACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99271 lncRNA downstream 152781 16409428 ~ 16409893 (-) True G83614
TU99247 lncRNA downstream 186388 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XR_004578163.1 lncRNA downstream 334237 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 486054 16074499 ~ 16076620 (-) False lmo7a
TU99103 lncRNA downstream 489603 16072840 ~ 16073071 (-) True G83474
TU99680 lncRNA upstream 351328 16965511 ~ 16966173 (-) True G83953
TU99803 lncRNA upstream 513127 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 693386 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 709862 17324045 ~ 17324878 (-) True G84182
TU99960 lncRNA upstream 718309 17332492 ~ 17346350 (-) True G84189
XM_026912793.2 mRNA downstream 46387 16472059 ~ 16516287 (-) True galnt13
XM_026946587.2 mRNA downstream 105462 16429932 ~ 16457212 (-) True kcnj3a
XM_034304896.1 mRNA downstream 156196 16370227 ~ 16406478 (-) False si:dkey-91i10.2
XM_026913177.2 mRNA downstream 170787 16370227 ~ 16391887 (-) True si:dkey-91i10.2
XM_026912694.2 mRNA downstream 199770 16353143 ~ 16362904 (-) True arl5a
XM_026911738.2 mRNA upstream 3388 16617571 ~ 16675267 (-) False mylka
XM_026911743.2 mRNA upstream 3388 16617571 ~ 16675267 (-) False mylka
XM_026911731.2 mRNA upstream 3388 16617571 ~ 16675267 (-) True mylka
XM_026912782.2 mRNA upstream 387935 17002118 ~ 17025530 (-) True tlk1a
XM_026911166.2 mRNA upstream 414054 17028237 ~ 17039813 (-) False mettl8
TU99188 other downstream 341808 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 1485479 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1725281 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2009215 14552451 ~ 14553459 (-) False med14
TU96950 other downstream 3846005 12713199 ~ 12716669 (-) False hspbap1
TU99754 other upstream 414124 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 2866937 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2954568 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3612545 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4521863 21136046 ~ 21144621 (-) False phgdh

Expression Profile