RNA id: XM_026910928.2


Basic Information

Item Value
RNA id XM_026910928.2
length 2017
RNA type mRNA
GC content 0.45
exon number 12
gene id epsti1
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15744507 ~ 15761304 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACCCGAAGACTCGAAACAGGTGAACTAATTCCAGTACAGAACCTATAGGATGTTGCGCATGCGCGACTGAACGAATCACTCCCCGAGATGACTCGTTCTTCCCGAGTCACATTAAAGATTCGTTCAAAATGACCGAATCGTTCAAGAACGACCCATCACTACTAACTCTGCTTTGACCTTTTGAACTTCCACGTGACCATGATCAGAGGAACACGTGGTTCACGCGCAGATGAGAGCTGAATCACTAAGTCAGAGGGAAGCTCCTGAAGACGGGGAGAGCTGAACCCTGTGCTACTGCAGAGGACCAGATTATGAATCCAAACAGGAGCGATGACATAAAGACGGCGCCAGGAGTCAACGAAACGCAAACGGATGGGAATAACTCCACAAACCAAAACACCCAACCTCAAGATTCTCGGAATCCGAGACACTCCGATGGATACACCATGATCCCACCAAATGAATCAAGACGGAGCAAACTGCTGAGAATGTCACAGAAAGAACAGAATGATCTGCAGAGATGGAAGGAGGAACATCGGCCTGGCCCCATTCAACTGGCCCCAGAAAAGCTGGGTGGGGATGTATCATTGTCAGAGGTACGACAGAGACAGCAGATAGTGGCCCACCAGTCTAAACTCAAGAAAAAGcTCATACAAGAGGACAGGAACCAACGCAGGAGAGAagcagaggaagaagagaatCAGAGGATGAAGGACATTCAGAGAGAGAAGGCCACCAGActagaaatgaagaaaaagcaggaggaggaaagaagaaaggagCTGTACCAACATGAACTCCTAATGAAAAGAGAAGAGCATCTTCAAAGGCTCGAGAGGTCCGGCTCAGTTCCTATGGCAGCAAGCAGCTCCACACCCACGTCATCATGGGCTCGAGGGCACGAATACAGGGAGGCCAGGAAGGCCGAGGAACAAATGGCCCTGCAGCAGAAGAAAGATGAGCAAAGAAGGAAGAGTCAAATcttggaagaaaaacaaaaacaagaagagGAGGACAGGAAAAGACAAATGGAAAATGAACGGCTGCGGGTGAACACGGCCTTCCTAGACAGACTGGAGGCGAGAGGATCAGGTAGAGCGTCTGAGTTGCTCCCCTGCACGCCGGAGCTTGGTAATGTCTGGCAGACGGAGGAACCGCAAGACCCTGCCTCGTCCCCTGTGCCCTTCCCATCACAGCTTCACACTGACAGCGCAGCGGAGGAGGATACTGACTTCGAGTGGGTTGTAATGAAGCTACAGAATAAGTTCTCTTACTGTCAGCGAGAGTATCTGGAAGACATTGTCTCTCAATGTAACGGCAATTACCAGCAAGCTTATGATCTACTCAATGCTTAAATGAGAATGTTACTGGCTCAAATCTTTAGTGTTGGGGACACTACTAGCttaactacttttttttttgtttctatttttttttttctattttctctaaACAAGCTACTTTTTCACCAAGAAGCACTGAAGCAGTTTGTTACACAGCACCTTCTCGTTACTTCTTCCCTTTTCCTTACTAGATCAATGTTTTGAATCAAGCAAAACGCAATCTGTGCAAACTATTGCATCTTTCAGGAACCAAATTCAATATATGTAATTGGTGTAAATGTACGTTGGGGCACAGGCTCACAGGTTCACTGATctgtgtggagaaaaaaaaggatcatGCTATACAGTTACACTAGGATCTACTAGTGATGAAAACAAGAATTTCAAGGCCATGTTCATCAGTGTTTATGAGTGTGAAAGATTCACATAGTAACGTGTACATGGGTAGTAGCTTGTAGTAGCTTTTCTTAGTAGCTAGCTTCTTTATCAAATGTGTAGTTTGGCTATTGCCTAGCTATTTTAAATTATGAGTTGCTTGCAGCTTGGCAAGTGACAATGGCAAAGTAGCATTCCCAAACACTGCAAAACATATACACAAAGCCATTCAATTCAAGAAAGGTCTCTGTTAAGACTTCCTTCTTCTGTACTCtgatgacaataaataaatgttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98774 lncRNA downstream 30067 15679450 ~ 15714440 (-) True G83216
TU98721 lncRNA downstream 143921 15548281 ~ 15600586 (-) True G83173
TU98718 lncRNA downstream 256673 15487083 ~ 15487834 (-) True G83171
TU98442 lncRNA downstream 370005 15371262 ~ 15374502 (-) True G82961
TU98423 lncRNA downstream 532188 15209315 ~ 15212319 (-) True G82943
TU98850 lncRNA upstream 68825 15830129 ~ 15887375 (-) True G83270
XR_004578248.1 lncRNA upstream 92756 15854060 ~ 15858049 (-) True LOC117597420
TU98865 lncRNA upstream 116316 15877620 ~ 15879115 (-) True G83285
TU98894 lncRNA upstream 159521 15920825 ~ 15923179 (-) True LOC113526197
XR_003402738.2 lncRNA upstream 159663 15920967 ~ 15923209 (-) False LOC113526197
XM_026912457.2 mRNA downstream 117886 15560485 ~ 15626621 (-) True vwa8
XM_026910495.2 mRNA downstream 239157 15442384 ~ 15505350 (-) False mycbp2
XM_026910919.2 mRNA upstream 18223 15779527 ~ 15830018 (-) True enox1
XM_026911892.2 mRNA upstream 102739 15864043 ~ 15892972 (-) True tsc22d1
XM_026911899.2 mRNA upstream 102739 15864043 ~ 15870224 (-) False tsc22d1
XM_026911906.2 mRNA upstream 102739 15864043 ~ 15867423 (-) False tsc22d1
XM_026909849.2 mRNA upstream 145623 15906927 ~ 15908431 (-) True kctd4
TU98290 other downstream 667312 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 907114 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1191048 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3016482 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 458660 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1267003 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3719816 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3807447 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4465424 20226728 ~ 20237615 (-) True G85848

Expression Profile