RNA id: XM_026911292.2


Basic Information

Item Value
RNA id XM_026911292.2
length 4525
RNA type mRNA
GC content 0.45
exon number 25
gene id LOC113524909
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 11710608 ~ 11737744 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCACGCCGAATGACGGAGTGAAAGGGCGAGTCTAGGGTCTATGTACTGCAGAGAAAGCGGATCAGTTgcatatatataatctataagaagtaaacagaaaaaaaagaataggtCTGCGTACCTTGCGAAAATGGAGCGTGGTTGTGCCTGAAGCGTTTTTCTTTAGAAGTCTAGTTTATGGAGTGAAGCAGGCCTacacacctcaccatcacacttTCTTTACACCCAAGGTATAAAGGTGTGAGGGCAGTTGTCCTCATCCTATTCTCCATCCCATCCATACTATCAATACTGCTGTCCAACTTCAGTCTCCAAAATtccagaggttttttttaattgctacaAAAATGGCGGGGAAAGAGCGCAGTCCTCGTCACCGACCCTGGTCTGTGTACCGTGCCAACACATTCGATATTGCTTCTGAAATGATAGGGCTGACACTGACAGGAAACAGTCAGGATCCTGATGAGCCAGTGTTGGAGTTTAGTCTGGcatgcagTGAGTTAGTGACTCCAACATAGCGTAAACCTAGTAGCTTTGTGGCAGTGAGCTGCACCACCCCTCCTCAAGCATTTTGGACGAAGCATGCTCAGAGTGAGATCATAGAGGGTACAAGCAACCCAATATTCCTCAGTAGCATTGCTTTTTTTCAAGACTCTCTGATCACGCAGCAGACTCAAGTGAAACTTTCTGTCTATGATGTCAAAGACCGTTCACAGGGCACGATGTACCTACTTGGTTCCGCCATGTTCACAGTGAAAGAACTACTGCAGGACAAATATCATAGGCTACACCTGACTCTAAGATCAGCAGAGAATGAGAAGATGGGCAACATCACCATTATTGCATGGCAGATAGAGGAGAAGAAAGACCAGAGAGCCCCATTGGCTCGCTCAGACACGATTAATGGCAGGATGGTCCTACCTGTTGATGAGAGTCTGACTGAATCCATGggaatgaaattaaaatctgCTTCTCTGTGCAAAGACACACTTCTGAAGGCAGTATTTGGAGGTACAATATCACGGATGTACCGTTTGCCCACCACGGATGGGAACCATCTGCGTGTCCTGGAACAGATGGCAGAGAGCGTGCTGTCACTTCACATACCCAGACAGTTTGTAAAGCTGCTACTGGAGGAAGATGCTGCCAGGGTGTGTGAACTGGAGGAGTTGGGGGAGTTGTCTCCATGTTGGGAGAATCTAAGGAGGCAGATCATCACTCAATATCAGACCATCATCCTCACCTATCAGGAGACACTTAGTGACCTGCATGAGTACAAGGGTCCCTCTTTTAAATCCAGCACTTTGAAAGCAGAGAAGAGGTTGGAGTTTGTGCCAACCAATCTCCACATTCAAAGGATGAGGGTACAGGGCGAGTCAGGCTATGATCGAACCTATGATGTGGTCACTACTGGAGCCCCTGCAGCACATCATCAAGGTTTTAAGGGCAGTGGTTTGAGGAAACTAATTCAGAAGTTTGAGGAGTCCAAGAAACATGCATATGAGGATGAAGGTGCTGGAGAGTCCCGTCCACATTCAGGAGTGTACCAGCCACAGGATGTGGTAAGAGCAAAAGAGATCATTTCCCACATTAACACCTTGAAGACGCAAGTCAGCTACTACACAGAGCGATTGTCCCGGGCTGCCAAAGAGCGCTCCGCTAACGCATTAGAGAGAACCCTCGGCATCCTCACAGAGAAGACAAGGCAGCTTGTGACAGTTTGTGACAACAAGCTGCTGGCCACAGCCATCCAGGCTCTGGCTGCAGCACGACCAGAGTTTGTCGCCTCTAAAACCTCTCCTTCTGGGCCGGACACTGAACGTGTAGTTCTGCGCAATGACCAAAGCTCTTCACAAGCCAAGTGGAGTGGCAAAGGGAACAGAGCCTCCATGAATGTGGACTGGCATGAGGAGGAGTGGgAGAAGGTGTGGTTGAATGTGGACAAAAGTATGGAGTGTGTAATCCACTGTGTGAACAGGCTGTTAATGAGGGAGAGGATGCAGAGCGACAGTAGTGAGGATGTCTTCCTCTCTGACCAGCAGCACAACACTAGCAAGAGAGGTATCCATGGCAATGCCTTCTGGATCAACCCCAACTTcccatcctcatcatcctccctGTGCATCCCCTTGTCCTCATCACATTCTCTTCCTGATTCCTGTTCATCATTatcatcctcttcatcatcttctCTGACTTCTGCATGTGTAACCAGTTCTCACAGATCCACCTATGGAAGCCCCAGTGTTGATGGCTGCTCTCCAGGTGAATGGAGTGATGCCCTGTATCCTCTACTGACCACACTGAATGAGTGTGTAGCCATGATGAGTGACATGGCAAAGAAGTCTATGGTGTTTGTGCTGATGCAGGACTGCGCTCCCACTATCGCTATGAGCCTGGCGTTACAGTATCGCAGAGACGTGGTCTTCTGTCAAACGTTGGCGGCTGTGATCTGTGGTTTCATAGCAAAGCTGAGGACTTGTTTGTGTGATCACGGCTTCCTAAGACAACTCCATACTATCGGCTTACTGGTCCAGGTTGAGGGTCTACTTAGCACTTatgGGGAGGAGCTGGCCATGCTGGAGGACATGAGCATAGGCATCATGGACCTTAGAAACGTCACCTTTAAGGTTACTCAGGCAACCTCCAGCTTCAGCCCTGACATGCTGCCTGTTATCACGGGGAACAGAGACGGGTTTAATGTGAGAGTACCACTGCCTGGGGCTATGTTTGATGTTTTGCCACGGGAAATCCAAAACGGGATGCTACTACGTGTTCAGCCAGTCCTGTTCAACATAGGAATTAATGAACAACAGACACTCGCAGAGAAGTTTGGAGACACCTCACTACAGGAAGTAGTCAATACAGAAAGTCTGGCCAGACTCAACTCCTACTATGATCAGTTCAAGGAAGTGCTGCCTGAAGACTGTCTGCCTCGTTCTAATAGTCAGTACTGTATACCAGAGCTACTGAAATTCCTCACTCAGAATGTGAACTCCAGGAAGAGTAAGAATGTGGACATCCTTTGGCAGGCAGCAGAGGTGTGCCGGCGTCTCAATGGTGTGAGGGTAACCAGCTGTAAGAGTGCAAAGGACCGCACAGCTATGTCTGTAACTCTGGAGCAGTGTCTGATCCTGCAGCAGGAGCACTGCATGGCCCCACAGGTCTTAAGCCAGGCGCTGGACTGTATGCGCAGTGAGGGCTGCAGGAGAGAGAACACCATGAAGAATGTGGGCAGCAGGAAGTATGCCTTCAATTCACTTCAACTGAAGGCCTTCCCCAAACAGTATAGACCTCCAGAGGGTACTTATGGTAAAGTGGAGACTTGATTGGGACACTCATCTATGTCCCCAACTCCTACTGTTTTTCACCAGGCTGCTCTCCCCCATTATCACCTTTAGTTTGTTTCCACTGATCTGAAGCAAATGCTGCCATGAATTCAGTCAAATAAACACTCACTGTAAATAGCCAAAAAAGGTTGTAGTTCACAAGATTGCATGAGTCACTGCTCTCTTCTGAACTTTGGGTACTATATCAAGGTGACCATGAGGAATACTTATTGGAAGAGTTTGATTGGGAGAGTAGGACTCCATTCATCCAGCAACAAAAACACTCAGCAACTGCACTAAGCTAATTTGTTAAGGAACTACAAGTGCAAATTGCATAGTTCCTTTAGTTTGTGTTTGGTCTCTACAGGACCTCAGTTTCACATACCCAGATTCAATGGATACATAAATGAGCATTGTTCTTTTTCCATTCATTAAACGTGCACATTATACTGTAGCTGAACTGTAGCGTCAGTGATGTGACAGAGTAAGTCTTATCAAGTCATATGCTATCACAAGGCTATACATATAATGCTTTAAATCAACCCTTTAGCTTATTGACAGCAACAGTATGCATTTTACGGGTTGTAGATTTTCAGGGAAAGGGCCTTTCTCATGCTGTTGCTAAGCACAGGTAATGTTTGTACAGTTAATACAGTGGAATGTTGTGAATAGATATtaagatattagatattatcattttaacaaTGTTGCGTAAGATAATTAAGACGCTATTCAATCAGTTGTTGGTTGTTAAATGTTTGTACATGTGTTATGTAAACCTCTTTTGGTTTGTGTTGATATCAgtcattataatcattataatttaTTCTCATGAGTTAggagtaaattaaaatattgtttttttttccagtataaAACCCTAATTTTCCATGTTAAAAAAGAAGCTCTATAGACACTTTAATATGCATCTTAAATCCTTTGTTATGCTTATAGCACGGAAAAAGCTAAGCCTGacacaaaaaaatcagtatGATGAACTTATTATGTAAAGACATAATGTGACtcattgtttatgtttttatttgatggCTATGCTAGCAGTATAAGAATATCCCAATAACTAaactcattttgttttattattaatgtccaCACAAACACTGGATTAGCTGTACATAATGCAGAACCTTTCATCTAAACATGCAGCTATTAAAACAAGagttacacaca

Function

GO: NA

KEGG:

id description
K01109 INPP4; inositol polyphosphate-4-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96157 lncRNA downstream 20640 11688535 ~ 11689968 (-) True G81014
TU96155 lncRNA downstream 23366 11686981 ~ 11687242 (-) True G81012
TU96130 lncRNA downstream 64622 11645391 ~ 11645986 (-) True G80995
TU96117 lncRNA downstream 108450 11601908 ~ 11602158 (-) True G80988
TU96090 lncRNA downstream 150022 11560380 ~ 11560586 (-) True G80972
XR_003402757.2 lncRNA upstream 22707 11760451 ~ 11763694 (-) True LOC113526311
TU96223 lncRNA upstream 22746 11760490 ~ 11763719 (-) False LOC113526311
TU96345 lncRNA upstream 107132 11844876 ~ 11857267 (-) True LOC117597344
XR_004578180.1 lncRNA upstream 109374 11847118 ~ 11857114 (-) False LOC117597344
TU96413 lncRNA upstream 303890 12041634 ~ 12045475 (-) True G81220
XM_026913038.2 mRNA downstream 9575 11698385 ~ 11701033 (-) True LOC113526203
XM_026912502.2 mRNA downstream 12872 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_026912501.2 mRNA downstream 12872 11692720 ~ 11697736 (-) False si:dkey-4e7.3
XM_034304672.1 mRNA downstream 14556 11692405 ~ 11696052 (-) True si:dkey-4e7.3
XM_026910266.2 mRNA downstream 65519 11641241 ~ 11645089 (-) True mrpl30
XM_026912749.2 mRNA upstream 10282 11748026 ~ 11756862 (-) True mfsd9
XM_026912621.2 mRNA upstream 150124 11887868 ~ 11895080 (-) True fhl2a
XM_026912597.2 mRNA upstream 228750 11966494 ~ 11995666 (-) False uxs1
XM_034304859.1 mRNA upstream 228750 11966494 ~ 11995666 (-) False uxs1
XM_034304858.1 mRNA upstream 228750 11966494 ~ 11995666 (-) True uxs1
TU95687 other downstream 675047 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 739451 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 1101566 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 2056153 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 2141488 9568555 ~ 9569120 (-) True G79826
TU96948 other upstream 975455 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 975455 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 2814707 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 3090042 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 3325681 15063425 ~ 15077195 (-) False dcaf6

Expression Profile