RNA id: XM_034304535.1


Basic Information

Item Value
RNA id XM_034304535.1
length 2015
RNA type mRNA
GC content 0.43
exon number 5
gene id acod1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16016189 ~ 16024344 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTCCAAAGAATTCACAATAAAACCATAGGGAAGTTTGCCATCTGGTGTtgttacaaaaaaattcaatgtcTCAGTTGATTTACAGCAAGGTTCCTCAACTTTAGTCCTGGAGGGCCAGAGTCCCCGCCCCAACATACCATCTAATCATTGTATTTAAACGagTGTTACAGAGAGCTTTGGCGCAGCCATATCATCTTTGAGCACAGCCCATCTTACTGATGGAGTTATCAGAAGAAGCAAGAGGATGATGCTGGATACACTGGGGGTTGGATTGCTTGGAACCAGAACTCCAGTCTTTAATGTGGCGTTCCAGTACAGCAAGagaTACCAAGAGAAACAGAACAGCAGTGTGTGGGGGAGACCAGGGTCATTCCTTCCACCTCATTATGCTGCATTTGTCAATGGGGTTGCGGTGCACTCTATGGATTTTGATGACACCTGGCATCCTGCCACTCACCCCTCTGGAGCCGTGCTGCCTGCGCTGTTGGCTCTAGCCGAGTCTCTGCCTTCTAAACCTTCAGGCTTGGACCTACTTCTGGCCTTCAATGTGGGACTTGAAGTTCAGGGAAGATTGATGAGGTTTTCAAAAGAGGCTCATAACATCCCCAAAAGGTTCCATCCTCCTACAGTTGTTGGTGTTATGGGCAGTGCAGCTGCCACAGCTAAACTCCTGGGTCTGTCCCCATCTCAGACCATGGCAGCTCTTGCTATTGCATGTTCATCTGCCGGTGCTCCACTAGCAAATGCTGCTACTCAGACTAAGCCACTGCACTTGGGAAATGCTGCTAGGAGGGGCCTGGAAGCATCTCAGCTTGCTCTTCTTGGTCTAGAAGGCAACAAACACATTCTGGACCTGGAGTCAGGCTTTAGCATCTTCTACCAGGATTATTTTCCACGTCATTTGGCTGAAGTTTCCCCAACTAGCCAGTACAGGTGGGTGCTGGATGAACAGGATATTGCATTTAAGCGATTTCCTGCTCATCTCGGCATGCACTGGGTAGCCGACGCAGCAGTCGAAGCGAGGAATAAAATTCACACCAGAGAGCCAAATGCTGATCTCAGTCAAATTAAAAGGATTGTACTGAGAGTCCCTTCATCCAGGTACATAGATTGCCCACTCCCAGCAACAGAGCACGAGGCTAGGCACTCGTACCAGTTCAACTGCTGCAGTGCACTGCTCGATGGTGAGGTCACTGTGGATTCCTTCAGCAGTAAAATGATGGAAAGGAAAGCACTGAAGGACCTGCTCCTCAAAGTTCATCTGGAAAATCCAGAAGACAATCAGGCTAGTTTCGAAAAGATGTACTCTGAAGTTGTGGTAGAGATGGCCAACGGAGAAACATACAAAGCACGTTGTAACACATTTTATGGTCACTGGAGAAAGCCTCTCAGTCAGGAGGATTTGGTAAGGAAATTTAAGAATAATGCAGCGACTGTGCTGGGCACAGATGCTGTAGATAGTATTGTGCAATTTATTGACAGCATGGAGACAGTCACTGACTGTTCTGTGCTTGGGTCATGCATGCAATTTCATAAGCACATAAACCACAGCAATGAATCCTATTATTCAGCATCTACTTGAGTGTTACTGTAATGATAACTCATACATAACTCAAACTGACATTTGACTGAGCTTTAATTTTGGAATGGTGATCTTTGCACATACAAGAATCTTCtgttttaaatgacttttaaaatgtatcaATGAAGCCTGATAAATTAAGTACTAGACTGCTTTTATTACCTGCCAAAACAGAAGATAATATCTGACATGAATACTCACATATGCATATTTAGTGGATTAGCTATCATAAATGGTTGATAGTCTGTTTAGTTAGTTGTTTCTTAAGACTTGAGATCAAGGTATGAAAAGTGAGAAATATGCCAATAATGAACACAGTAGTATTACTTATTCTTTATGCATGTTTGCAATCAGTAACAACTGAAACTAAATGTTGAAGCTTTGTGTACTCTGATGTATTTacataatgcataaataaagtGTTAGAAAAC

Function

GO:

id name namespace
GO:0019543 propionate catabolic process biological_process
GO:0047547 2-methylcitrate dehydratase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99071 lncRNA downstream 3982 16009956 ~ 16012207 (-) True G83446
TU98939 lncRNA downstream 46843 15968818 ~ 15969346 (-) False pou1f1
TU98926 lncRNA downstream 47815 15943740 ~ 15968374 (-) False pou1f1
TU98904 lncRNA downstream 76133 15939499 ~ 15940056 (-) True G83309
TU99081 lncRNA upstream 1371 16025382 ~ 16026189 (-) True G83456
TU99082 lncRNA upstream 6523 16030534 ~ 16030743 (-) True G83457
TU99102 lncRNA upstream 48386 16072397 ~ 16072684 (-) True G83473
TU99103 lncRNA upstream 48829 16072840 ~ 16073071 (-) True G83474
TU99098 lncRNA upstream 50488 16074499 ~ 16076620 (-) False lmo7a
XM_026911637.2 mRNA downstream 6365 15999677 ~ 16009824 (-) False zgc:152951
XM_026911632.2 mRNA downstream 6365 15999677 ~ 16009824 (-) True zgc:152951
XM_034304766.1 mRNA downstream 42275 15967944 ~ 15973914 (-) True pou1f1
XM_026912773.2 mRNA downstream 67848 15945570 ~ 15948341 (-) True vgll3
XM_026909849.2 mRNA downstream 107758 15906927 ~ 15908431 (-) True kctd4
XM_034304336.1 mRNA upstream 19272 16043283 ~ 16076389 (-) False lmo7a
XM_034304342.1 mRNA upstream 19272 16043283 ~ 16076212 (-) False lmo7a
XM_034304341.1 mRNA upstream 19272 16043283 ~ 16076212 (-) False lmo7a
XM_026912759.2 mRNA upstream 19272 16043283 ~ 16076209 (-) False lmo7a
XM_034304340.1 mRNA upstream 19272 16043283 ~ 16076209 (-) False lmo7a
TU98290 other downstream 938994 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1178796 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1462730 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3288164 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 195953 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1004296 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3457109 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3544740 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4202717 20226728 ~ 20237615 (-) True G85848

Expression Profile