RNA id: XM_026911632.2


Basic Information

Item Value
RNA id XM_026911632.2
length 3349
RNA type mRNA
GC content 0.39
exon number 9
gene id zgc:152951
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15999677 ~ 16009824 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTACTAGAGATCATTACAGGATCTCCACAACCACTGCGTTACCTGAACTCGTCTACAACATCTTTTAACATCAGCCTAACCGTATCGTGGGTGTAGTTCGATTTTTGTAGTCAGTCTAAATACTCCCCTCCCCTGGTTGATCAAAACAATAACGCTTCATTGAGACAAATACTCATCAACATGTACAAAATATTGTTTGGTGGTAGAATTCCGCTGCTCCACCTGCACCATAGATATCCCCAAGTAGAAGTGCAAAGGGAGAGTGAACAAGGGAGCATCAGAAAGCACCTGATTTGTAATGAGCCCACTGTTGTCGTCACTGTAGTAATAAAGGGACCTCAAACAGCACAGGATATTAAAGAAGTGTAATAGTGCTGCAAATCATCCCATAGCAATAGCgcagtattacagtattatattTCAGATGTGAAACGCGATTAGTAACACTGTTATTGTAGTACAGTGTCAGGACTGCAGCAGCACAGATACTGTTACCTGCTGGCTTAAGCTTTGTGTTTCAGCTTGGAGTCGTCTGTCACTCACTTCCGGTGTAATGGGGAAATTACCTTCAAAGCAACTGCTGGTCTGACAGGTGTATTGATGGCTGTGTTTGAGAACCATATAGCAGGAAGAGTTACTGTGTACTCGGTGCCAGGATGCCCGCAGTGTTTACAGGCCAAGGCTGCATTACAGGCACTGAATCTACCAGTGTGTGAAGTGGATGTGAGTCATGATGCAGCTGTCAGGGCTTGGCTGGATAAGATGACTGGTAGCAGCACTGTGCCGCAGATATTCTTTAACAACGTCCACATAGGAGGAAATGAAATTCTTCAAAATTTGACCCCTGATGAACTTGAACCTCTGGTACGTATGGTGAAGGAGAAGCCTGTGCCTCCAGACACCCTACCATTACCTGCAGGAAACAGCCTTGAGTCTGAGGAGAGGGATAGAGGAGCAATTACAGCTTCTGAATTATCTGAGGCCCTGAGGAATCTGATCATGAAACTGTACTCTGATCACCTCTCTGCTGATGGCAAGtcAGTGGACTATAAGGCCATGTCTAAAAGCACATGTTATGAACGTTATTGTGAGCTGGCTGTGTACCTGCAGCGTGTGGAGCTACTCTCTTTGAGTCATGAGGAGAGGCTGGCCTTCTTCATCAATGTCTACAATGCCCTGGTTATCCACGGCTACCTGCGCCTCGGCTTCCCCAAAAACATGTGGCAGAGGTACCGGTTCTTCAACTATGTGAGTTATCTGATTGGAGGAGAGGTGTTCACACTGCAGGACATTGAGAATGGAGTGCTGCGGGGAAACAGGAAAGGAATAGCACAACTTCTGAAGCCCTTCTCAAAGAATGACCCTAGACTACAGGTTGCACTTCCTGAAGCAGAGCCTCTAATTCATTTTGCACTGAACTGTGGTGCGAAAGGCTGCCCGCCCATTAGGGCCTACACCCCAAAGGACATTGGCAGTCAGCTGCGGACTGCTGCTGAGGCATTTCTGGAGGCTGATGATGGCTGCATAGTGGATTCTATGAAAAGAGAGGTGAAGCTTAGCCAGATCTTCAAATGGTACAAGGCAGATTTTGGAGACACTGATGAAAAGTTGCTGAACTGGGTTTTAAACCACATGAGGGCATCTCAGAAGAAGACAAGTCTGAAAACTCTTCTATCTACAGGGAATGTTAAAGTGAGATACATGCCTTATGACTGGTCCACCAACAGTTCACACTGATTAAAACTCTCTTACTAAGAGTTTAGGGCTTCAGGATGACTGACTCCGATGTCGTTGATATTTTCTTTAGCAAATGCATGAGAGCACAGATATTTTTACTATGGCTGTAGCCAACTTCTCTGTCAACACTAGGATAAAAATTAAACCACAGAAAAGCTGGCCTTGCTTTTAAGAGGATAACTATGCATTTTAACAATAATTCCTCTACGCTCCAAAGGGCAAGTTTTCCTACCAGCCACTATCCTAATAATTATACTGGATTTTACACTTCCTTAATAATTCTTTACTTTGTGTTAACCaactttatttctcttaaaaagatttaaacacTATAATAATTACGatatttaattgattttttttttaccattttgttAATTTAGCTAGTATGGTCCACTTTAGctatgaaaacaaatgaatatttGTTGTGGCTATAAGCACTAAGACATTATGCCCCACTGGGGCTGTTCAGCATGGACTATATCAGCAACTGGAcctaaaagcataaaaatgcaTGCAACTGCaccattattatttacacatggCTCACAGTGAGCATAAACTTTAGCTAAGTCCATTCCATTTAGAATGTCAATATCAAAGCTTACATAATATCATATTAATTGATTTGTCTGTGCAACTATTTGCCATGTTCAAAATACTCATGAGAGTtgagagtgtgttgtgaaaTTGACTGCATGTTGTATGGAAAGGCTGGAATTTTAAAATCCTATACATAGTAATGTATGAACTCTATTCCATCCGGTACCTTTTCACCTCGGTATAAGACACCTATATTCCAAGTGTTCCTCATACTTAGTTCAAGAATTTCtgttctatattttattaactCAAAgatctatactgtatatgcaatatgtaaaggaaaaataaacagcaggTAAACAATTTTATAAACCGGGAATGATTTCATTATTATACTTATCAAGAATTAAATCAAtgcaaagctagctagctaatattgaATTCATTCTGTTGCATGAACCTGGGTTATATAATTCTTGAGCAATATTATGCACTGATGAATAAATTATGATATTGCAAGCTTTAAAAATGAAGCATATGAATCTTCTGGTTTGGGTCCCTCTTGTTATCTGAAGCCTGTGAATTGAACGATATGGATTATTTTGTAGAGTTTATTAATTGGTTGTACTTCCTTTCATATGCAGCTGGAGTCACTGTTGGTTATGTGAATACTGTTGTATTATGTGTCATTACATGGTGCCACTGAATTGGTACATGTTTACTTTTAACCATATGCATTATGTTTAGCaagaaaaatatatgttttgtgGAATGAACGATGAAAAAGTTTCTGTTGTGCATATTTCACTGAGCAGTTTGAGAGAAatctatgtatgtttttttctcctcataTTCCGCACCGAGATAATGCGCATGAAATTGAAAATACACTGAGTGTTTGCCTGATAAATGAACTGTGTCATTACTTATCAGCAATAATTGCTTACACAGGTTTCCATTCATATTcaagaaatatttataaaaattaaaaataattaattattacatgACTAATAAAATTCTGTATTGCTTGAATGGTAGCATGTTGATTATTATTGAGCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98939 lncRNA downstream 30331 15968818 ~ 15969346 (-) False pou1f1
TU98926 lncRNA downstream 31303 15943740 ~ 15968374 (-) False pou1f1
TU98904 lncRNA downstream 59621 15939499 ~ 15940056 (-) True G83309
TU98901 lncRNA downstream 59621 15939599 ~ 15940056 (-) False G83309
XR_003402738.2 lncRNA downstream 76468 15920967 ~ 15923209 (-) False LOC113526197
TU99071 lncRNA upstream 132 16009956 ~ 16012207 (-) True G83446
TU99081 lncRNA upstream 15558 16025382 ~ 16026189 (-) True G83456
TU99082 lncRNA upstream 20710 16030534 ~ 16030743 (-) True G83457
TU99102 lncRNA upstream 62573 16072397 ~ 16072684 (-) True G83473
TU99103 lncRNA upstream 63016 16072840 ~ 16073071 (-) True G83474
XM_034304766.1 mRNA downstream 25763 15967944 ~ 15973914 (-) True pou1f1
XM_026912773.2 mRNA downstream 51336 15945570 ~ 15948341 (-) True vgll3
XM_026909849.2 mRNA downstream 91246 15906927 ~ 15908431 (-) True kctd4
XM_026911899.2 mRNA downstream 129453 15864043 ~ 15870224 (-) False tsc22d1
XM_026911620.2 mRNA upstream 6365 16016189 ~ 16024344 (-) False acod1
XM_034304534.1 mRNA upstream 6365 16016189 ~ 16024342 (-) False acod1
XM_034304533.1 mRNA upstream 6365 16016189 ~ 16024342 (-) True acod1
XM_034304535.1 mRNA upstream 6365 16016189 ~ 16024011 (-) False acod1
XM_034304532.1 mRNA upstream 6365 16016189 ~ 16024011 (-) False acod1
TU98290 other downstream 922482 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1162284 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1446218 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3271652 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 210140 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1018483 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3471296 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3558927 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4216904 20226728 ~ 20237615 (-) True G85848

Expression Profile