RNA id: XM_026911699.2


Basic Information

Item Value
RNA id XM_026911699.2
length 4277
RNA type mRNA
GC content 0.53
exon number 21
gene id sema5ba
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12776226 ~ 12873123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACACAGCGCAGTAAAGCAGCTGCAGGTATAGCGGTGAGTCTCGCGAACGGCAAAGGGATACACGGTTAACCAGCTAAAGGACGGACAGCGCCATTTATGCTGAGACTTTACACCCTGCTGAAGGACAGCCAGAGGGGTTACGAAAGGATTACCTACTGTTTCTGCAACAACTCTGCATCTCAAGAATGATGTCCTCGTGATGCCCTCGTGGAAGTGCATTCCAGAGGCCCACCTTGGCAGCTAGAGGAGAGGTTGGCCTCAGTCACCATGACATCGTTGCCACGGAATCTAGTTTCCCTGGCTGTGTCTGGCCTTTTCCTCTGTCTGCTCTCTTTTGGCATCCCTGCTGTGTTCTCCCAAAAGCCCACATCTCCCACAGAGTCCAGCCCAAGCTTACAACCACAGAGCAAGCCAGAGTGTACCCACCAAGAACACCCTATTATCTCTATTCAAGCATTAAGCCCTTGGATTTCCATTTTCTCCCACCCTGGTGTACGAGACTACTCCCAACTCACTCTTGATCTGACCAGGAATGAGCTAATAGTAGGGGCAAGAAACTACCTCTTTCGACTGAACTTAAGCAACATTTCACTTATCCAGGCGACAGAATGGGGCCCAGACGAAGACACCAGGAGGTCCTGTCAAAGCAAAGGGAAGACGGAGGCGGAGTGTCAAAACTACATTCGAGTACTTCTGGTTAACAAGACCGAGGTCATGTCCTGTGGCACCAACGCTTTCCAGCCTCTGTGCATCACCAGAGAAgTGGGGAATATGAGCAGAATATTGGAACGGGTGAATGGCGTAGCACGCTGCCCCTATGACCCTCGCCATAACTCTACGGCGGTTGTGACAGACAGCGGAGAGCTGTACGCTGCAACAGTCATCGACTTCTCTGGCCGGGACCCAGTCATATACCGCAGCCTGGGAAACATGCCTCCTCTGAGGACCGCCCAGTACAACTCCAAATGGCTCAATGaGCCTCAGTTCATCTCAGCCTATGATATTGGACTCTTCACATTCTTCTTCTTGAGGGAGAATGCAGTGGAGCATGACTGTGGGAAGACGGTGTACTCTCGGGTGGCACGCGTCTGTAAGAATGACATTGGTGGCCGCTTCCTGCTTGAGGATACGTGGACCACTTTCACCAAGGCTCGGCTGAACTGCTCCCGCTCTGGAGAGATCCCCTTCTACTACAATGAGCTCCAGAGCACTTTCTACCTGCCTGAGCAGGATCTCATCTATGGCATCTTTACTACCAATGTGAACAGTATAGCTGCATCAGCAGTTTGTGCATACAACCTAAGTGCCATCACACGTGCGTTCAATGGGCCGTTCCGCTCCCAGGAGAACCCACGGTCCACCTGGCTGCCAACTCTTAACCCCATCCCCAACTTCCAGTGTGGTACCATCGAGGACGAGGGGCCCAATGAAGGCCTAACCGAACGCAGCCTGCAGGATGCTCAGCGACTCTACCTCATGAATGACGTGGTACAGCCTGTGTCTGTAAACCCACTGGTGTGGCAGGATAATGTGCGCTTCTCCAAGCTAGTGGTGGACATTGTGCAGGGCCAAGACACGCTGCACCATGTCATGTACATTGGCACAGAGTATGGGACCATTCTGAAGGCTCTGGCCACCACCAATAAGAGTCTACAAGGCTGTTATTTGGAGGAGATGCAGCTCCACCCCCCTGGTGTAAAGGAGCCAATCCTGAGTCTCCAGATTCTCCATGGCGACAGGACTCTCTTTGTGGGTCTGAATGACCGAGTGCTAAAAATTCCTCTGGCTAGATGCTCTAGCTATAAAACAGAACAGATGTGTTTGGGTGCCAGAGACCCATATTGTGGTTGGGACAGGAAGCAGCGACGCTGCACAACAATTGAGGATAGCTCCAACATGAGCCAATGGTTCCAGAACATCACTGCATGCCCACTGCGGAATCAGACCACAGATGGTGCCTATGGGCCCTGGACTCCATGGCAGCCTTGCAGTCACGATGACGGGGATGGCACCAGTGCCTGCCTTTGTCGTTCTAGGGCATGTGACAGCCCTCCTCCCCTCTGTGGGGGGAAAATGTGTGAGGGTCCTACCATTGAAGTGGCCAACTGCTCAAGGAATGGTGGCTGGACTCCCTGGTCATCATGGGGTCAGTGCAGCACCAGCTGCGAGATTGGCTTCGAGGTGCGCCAAAGGTCCTGCAACAACCCCTCGCCCAGACACGGTGGCCGAGTGTGTGTGGGCCAAGCCAGAGAACAgagATTCTGCAATGAGAAGGTTTCCTGCCCTCAGCCTGTTTTCTGGTCGTCGTGGTCACCCTGGTCTAAGTGCAGTGCTGAATGTGGGGGAGGAGTGCACTCTCGCTCCAGGAATTGTGAGAATGGAAACAGCTGTCCAGGCTGTGCACTGGAATACCAGGCCTGTAATCTGGAGTCATGTCCTGAGGTGAGGCGGAACACTCCTTGGACACCATGGGTGCCAGTCAATATAACTCAAGGTGGTGCACGCCAGGAGCAGAGGGTGCGCTACATTTGCCGGGCACAGCTGGCAGATCCGCATGAACTCCAGCTGGGTAAAAGGAAGGTGGAGACGCGCTTCTGTCCCAACGATGGCACTGTCACCTGTGACACAGACTCTCTTGTGGATGAGCTACTCAGGACTCCTGGGGTGAGACTCACAGGCTCCAGCTGGTCGTTATGGGAGTCATGGACTGCGTGCAGTCAGGAGTGTGCTAAAGGCTATCGCTCCCGAAAACGCACCTGCACTGGCATGGACGGCAAGAATTCTCCCAACGCCTGCAGAGGCTCTCCTGTAGAGTACCAGGACTGCAATCCCCAGCCATGTcctgTGAAAGGTGCCTGGTCTTGCTGGTCGTCATGGTCACAGTGTACGGTGCCCTGCGGTGGCGGGCACTACCAGCGGACACGCACATGCACAAGCCCCGCGCCCGCCCATGGAGGGGACATCTGCATCGGGCTGCATACAGAGGAGGCtctgtgcaacacacacacctgccaggGTGGCTGGATGGCTTGGACCTTGTGGTCTGCATGTGATGATCTGGGCCTACAGTCACGCACTCGGGTGTGTGGGAATCAGGGTTCTCCATGTGTGGGGAACAGCACCCAGTACAGAGACTGCAACGAGATACCCGTGATTTTACCTGCATCTGGCTATGATAAAGACCAGCAGTGTGGGGGTAAGTGCGTCGACAATGCCCCAATCATATAAAACAGACAGAATGTGTTTTTACATGCATGTTGGGCCGcacttgtgcatgtgtgttcatGTACCTACATGTTATGTGCTCTTGTGACTGTTGCAGTGTGCAAGCATGGgtgtatgcatgtgtgaatgtgtttgctCTTGCAACCCTGCTCTCTCATGCAGCCCTCAGGACGTAATGGAAACTCGCCAGGTGTAACCTTTCTCCTGCCCTCACTCCCTCTCCTTGACTCTCAGTAATGTAAATGAGTGCTGGAAGGAGAGTTGAGGACAAGGAGGTAGAATCTACAGGGCCGAACACGAGCGTTCACACCCCGATGCGTCGCTGCTCTTGAGCTGAGACGATTCTCCACACTCTGTGCCCTGTCAGTAAGGCGCACACATTCAGATGAAATATACATAAGGTTGGCACACCGGTTCTTTTTAGGCCACAGATCCAGGCCACAGTGGGTACCCTGCAGTGCCCTTGAGATGCCATCACCATGCCAACGGCTGGAGCCAACCACAGGCAGCTCATTACCCAGCATCCCCAATGAGCGGTGCTCTCTCGTGTCTCATCGTCCAATTAGAGCATTGCAGCCTGGCCTCCTCTTTTTCATTATGCTAATTCATTATTGACCTAGCCAGCAATATGACTGCTTCTTCACGCACTTCTGCTAAGCAGGAGACTGTGTCTCAGTGCAGCTTGAGTCACTCTGACATCCTCCCACATCTGCATTGAAAAGAACATAGTAATGACATTGAGCTAGTAATGACTGATATACTGGTGTCACAGCTTTTCCTGGTGTACCTATTAAGAGTTATTTTTTGCACATAATGGGCagactgaaggggaaaaaagttgtGCGAAAGCAGGGAACAGATGATTTCAGAGACTTGTAGacaaataactttttaaatgtCCTTATTCGGTTAACCTTGGCTATCTTATTTCCCCAGGGTTCACACTGTTGCATCTGATAGCGACAGGTGTGTCATGTTTTCTGGGAGCAGGACTGTTGTCATTCCTAGTATATGTCTACTGTCAGCGCTTCCACAAACCCTCACAGGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96858 lncRNA downstream 84044 12700250 ~ 12700493 (-) True G81634
TU96832 lncRNA downstream 128675 12654336 ~ 12655862 (-) True G81612
TU96773 lncRNA downstream 276849 12482679 ~ 12507688 (-) False irs2b
TU96731 lncRNA downstream 349965 12434367 ~ 12434572 (-) True G81520
TU96617 lncRNA downstream 487902 12296347 ~ 12296635 (-) True G81413
TU97040 lncRNA upstream 47793 12920916 ~ 12923093 (-) True G81802
TU97184 lncRNA upstream 223586 13096709 ~ 13099204 (-) True G81932
TU97263 lncRNA upstream 342247 13215370 ~ 13250509 (-) False gli2a
XR_004578245.1 lncRNA upstream 404777 13277900 ~ 13282536 (-) True LOC117597411
TU97281 lncRNA upstream 426335 13299458 ~ 13300403 (-) True G81995
XM_034304681.1 mRNA downstream 56500 12713065 ~ 12728037 (-) False hspbap1
XM_026912186.2 mRNA downstream 56500 12713065 ~ 12728037 (-) True hspbap1
XM_026912674.2 mRNA downstream 123396 12657053 ~ 12661141 (-) True LOC113525968
XM_026910153.2 mRNA downstream 194987 12543779 ~ 12589550 (-) True col4a1
XM_026910761.2 mRNA downstream 288086 12482661 ~ 12496451 (-) True irs2b
XM_026912696.2 mRNA upstream 68110 12941233 ~ 13011343 (-) False adcy5
XM_026912695.2 mRNA upstream 68110 12941233 ~ 13011343 (-) True adcy5
XM_026912697.2 mRNA upstream 140402 13013525 ~ 13021552 (-) True hacd2
XM_034304637.1 mRNA upstream 201573 13074696 ~ 13085298 (-) True LOC113526136
XM_034304639.1 mRNA upstream 201574 13074697 ~ 13085298 (-) False LOC113526136
TU96948 other downstream 56512 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 67868 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 1748976 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 1813380 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 2175495 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 1679328 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 1954663 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 2190302 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 3346841 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 4155184 17028307 ~ 17039843 (-) False mettl8

Expression Profile