RNA id: XM_026911738.2


Basic Information

Item Value
RNA id XM_026911738.2
length 6187
RNA type mRNA
GC content 0.48
exon number 32
gene id mylka
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16617571 ~ 16675267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGTTACGTCAAGAGCCGTGACAGCGCGTTAACTCCAAACAGCAGCGTGCAGCTTCACAGAGACAGCGCAGAGTTTTGAACCAAACAACACGCAGACTTTGTGCATCCGCCGCGaAATATGGGAGATGTGCAGTTGGTGACGAGTTCTCCCATGTCAAAGACCAGGCTGACTTTGGGGAAGTCCTCTCTCAATAATGAAGCTCCAACATTTACCCTTCCTCCCCGCAATGCCCGTGTCTCTCAAGGAGGCACAGCTCGACTTGAGGGCAAGGTGCGTGGTTCTCCAGAACCGCAGGTGTGTTGGTTCAGGAATGGGAAAGTTGTGATCGCTGGTGGCCGATACTCCATGGAACAGAGTGCACGTGGCACCTTTAGTCTGGTGGTTGAAGGAGTCCAGAAAGACGATGCAGGACCTTACACCTGTGAGGCTATAAACGATGCAGGAACTCGACAGATCACTGTAGACATCATTGTGGAAGACAATGCAGTCAAGAAATACAGCCTTCCCTCTGCCAGTAAACCAGGGGGTCGCTTAGGGCTCCCTGCAGTGGAGAACAGACCCAGCATCTGGGGTGAAAGTCCTCCAAAGTTTGTAACCAAACCTTCCCGCCTCTACCTGAAAATTGGACAGACTGGCAAGTTCTCAGTTAAGATTACAGGACGTCCCCAACCACAGATCCAGTGGTTTAAGGGTGATGATGAGCTCCAGAGTTCAGATCATTACAACATGTTTGAAAGGTCAGGGCTGCACTTCCTGGAGATCCGCTTTGCACATGCAGAGGATGCTGGGATATACACCTGCCTGCTGGCCAACAGTGCGGGCAAGGCCTCTGCTACAACAGAACTCATTGTTCAAGaTTCAGACATAGACATGGACATCAAATCTTCAGGTAATGCGCTCTCGAAGACAGCTGCCACTACTGCAGCTGAGCATAAAAGTAATGGCCTTATCACTGATCAAAAATCCACCAACACGTCCACACATAGTGCAATCACAGATACCCACACAGCAGCCACTACTGCCATAGCAGCCAAAGACAGCCCAGCAACCAGGCCAGAGGTCCAGAAAAGCGCTGTAACATCAGCCTCACAGACCACTATTGAATCAAAGGATGAGAGGCTACCAGAAGGTCAACAGAGGTCATCAACCTCCATAACCATTAGGAGTCAACAGGCCAAGAAAAGCAGTTTTGAGTCTAGCACCAAGGTGACAGAGCCTGTTGTGCAGAAGAAAGATCCAGATAGTATAAGATCTTCTGGGAGGAATGTGGTTCCTGCAGTGAAGGAGTCCAGCAGAGAGACAAGCAGGATGACTAGAGAGAGTCGAGTGGAAGCTCTGGGGAGTCCACCCAGCTTTGATTTACAGCCTCAAAGCCAGGAGGTCACACAAGGAACTAAAGTGACATTCAAATGCCAAGtgtCTGGTTGTCCGGTGCCCACTGTGAGCTGGGTTAAAGATGGTTCTGTGCTCAGACTCAGAGCAGGAATCAGCACTCAGCAGGAGGACAGTCTGCATCTGCTGTGTGTGGAAAATGTGCAGAAAACGGACGCAGGACAGTACAGCTGCACCGCCACAAACAGCAAGGGGAAAGCTACCTGCAGCTGGACTCTTACTGTAAAGAgcccaCGTTTAGAAGGGAAGGCTCCAGTGTTCAGCAGTGCTCTAAAAGGCTGTGCTATAACAGAGGGACAGAACATCAGTCTGCAGTGCTCAGTGGAGGCCAGGCCACAACCCACAATCTCCTGGCTGCTCAATGataAAGCAATCTCATATGGAAATGCTGTGTTTGATGGCATTCAGGCCCAGCTGACTATACAGGATGCATTGTGTGCTGATGAAGGCTTGTACTCCTGTGTGGCTGAGAATGAGCATGGGCGAGCAGTGTGCACTGCCCGAGTGCTTGTTAAAGCCAAGTCAAATGTTAAAAGACCAGTTGCTGTGCCGGTCTCGGAGCAGAAGAGACCCTCTCCTCCAGTGTTCCTAAAGGAACTGCGAGATCTAAGGGTCATGGATGGCAGCCAGGTTACCATGACTGTGGAGGTGACGGGACATCCTGCTCCAGAGGTGCTCTGGCTACAAAATGGGAAGGAGATTCAAGAGTCTGAAGACTTCCACTTTGAGAGCAAAGGCAGCCAGTACAGCCTCGTCATACAGGAAGTGTTTCCCGAAGACACCGGCACATACACTTGTGAGGCGTGGAATGAAGTGGGAGAAGCTCGTACTGAAGCTTCGCTCACTGTGCAAGagccCCAGGATGGTGTACAGCCATGGTTCATCACTAAGCCCAAGTCCACCACGGTGTGTGAGGGTCAGCatgctctgctttcctgtgccATCGCAGGAGACCCCTTCCCAGAATTCCTCTGGATGAAAGATGGACAGGTGGTGTCCTCTGGGCAGGACTTTGAGGTGCTGCAGAAAGAGGATGTAGTTTCACTCTTTATCAGGAGAGTGAAAGCTGATCATGCTGGAAACTACGAGATCCATCTCAAAAACAAAATAGGAGACTGTAGCGCAGTGGCCCCTTTGCTAGTTAATAAGGACTCTGGGCATGAATCTTATAAAGTAGGGGCTGATAAGAGATCTGGAGGGGTGGAAAAGACAGAGCAAGACAGGGGAGAGCAGAGAGAGGCACCAAGCTCTACAGCACTCCTATCAGAACCAGATCCGGTTTGGGGCCGTTGGGATCCAGAGGAGTCAGCTGCTTCCCGCGGTCTTCTGAAAAGGCGAGTGGAGACCAAGGAGCATCGGGAAGACCAAATCCGACAGAAGGAAGCTGAGCAGATTGACTTCCGAACCGTCCTGGGCCGGAAGGTCACCACCAAGAGTGTCTCGGAGGAGGACCTGAAGGAGATCACGGCCGAGCAGATGGACTTCAGGAGCAACCTCCAACGGCAAATCAAGCCCAAGACCCAAagtgaggaggagaggaagatcCACTTCCCCCAGCAGGTGGACTTCAGAGCAGTGCTAGGCAAGAAAGGAACTGTGGGCCCCAAACCTGCTTCTGCTTATTCTGCAAAGGCAGATCTCAACAAAAATGAGCCAACTGACTTTAGATCTGTGttaaacaagaagaagaaacaagGGGGTGTGGAGAATAATACAGAGAGCCCAGAGCCAAAGAGCTGCACGGGGAAGGAAAATGATGTGAACTGTGTACATGGAGGGACGACGGAGATAATGAAtgcaggaggaggaaaagagccacttttcacacaaaaacTGAGAGATGTGAGAGTATTGGATGGAGAACGCTTACATTTGCAGTGCCAGTTTTCAGCTGAATCACCTGCTACTGTCACATGGAGTCTAGATGGAAAAGTTATCAAGCCATCCAAATTTATCATCATTACCAGTGAGGGTGGCCTTTGCTCCCTGACCATCGATAAGGCCTTGCCTGAAGATGAGGGCCAGTATGTGTGCAGAGCTGAAAGCAGTGCAGGAACAGCTGAGTGCTGCTGCATGGTGCAGGTTGATGATCCTAGTGCCTCAAACTCAACACCAGCTGACAAGAAAAGTAAGAAGCCCTCTACTCCAACCACAGAGAAAGAGGCCCGAATCAAGAAGCCACCACCCAAAATACTTCCTAAACAAGGCATGGCTCCTCAGATCGTGCAGTTTCCTGAAGATTTGAAGATCCGAGCAGGTGAGCGGGTTAGTCTTCACTGTAAGTTCACTGGAGCTCCACCTATCAACTCCACCTGGCTCAAGTTCCGCAAACCAATTGAAGATGGGACAGAAGACATCAGCATTGAGAGCACAGACTCCAGCAGTCAGCTGACTATAGCACACAGCCAGCAGAAGCACTGCGGCTGCTACACCATTGAGATCAGGAACAGCTATGGCATGAAGCAAGCTGCCCTCAATCTCACCATAGTAGACAAACCCGACCCTCCTGCCCGCATCCCAGCTGTCACAGACATCCGCAAATCCAGTCTGACCCTCTCATGGTACGGCCCCACATATGATGGCGGAAGTGCTGTTCAGTCTTATAAGCTGGAAATCTGGAATTCGGTGGATAAGGAATGGAAAGAGCTGGCATCCTGTAACAGCACTTCTTACAATGTTCAGAACCTGCCGCCTGATAGGAAGTACAAGTTTCGTGTAAGAGCTGGGAATATCTACGGTGTTGGGGAGCCTAGTGCAGAGAGTGTCCCTGTTGAAGTGGGGGTGgaggaagtggaagaagaaGATGCAGAGAATAAAGAAGATGACGTTGAGCCTTCAGATGATGAATCAGAGAAGCAACCCGAGTACAGAGACATCACCATCAGAACAGATGTGAAGGTTAAAGACTTCTATGAAGTGGGCGACCGGCTGGGATCGGGCAAATTTGGAACAGTGTTTAAACTGGTAGAGAAATCAACCAAAAAGGTCTGGGCTGGGAAGTTTATAAAAGCATACTcagcaaaagagaaagagaatgtcAGACAAGAGATTAAAATCATGAATGACCTGCATCACCCAAAGcttgtgcagtgtgttgatgCCTTTGAAAGCAAGTCAGACATGGTCATGGTACTGGAAATGGTCTCTGGAGGAGAGCTGTTTGAGCGGATCATCGATGAGGATTTTGagctgacagagagagaggtgatTAAATACATGCTGCAGATTGTAGACGGGGTCAATTTCATCCACAAGAAAGGCATCGTTCACCTGGACCTCAAACCGGAGAACATCATGTGTGTCAACAAAACAGGCAGCAAAATCAAACTCATTGACTTCGGACTTGCTCGCAGGCTAGAAAATGCTGGCTCACTGAAGGTGCTGTTTGGAACTCCAGAGTTTGTAGCTCCAGAGGTGATCAACTATGAAGCGATCAGCTACACTACAGACATGTGGAGTATCGGTGTCATCTGCTACATACTtgTGAGTGGATTATCTCCGTTCATGGGGGATAATGAAAATGAGACGCTGTCCAATGTTACATCTGCAACGTGGGATTTCGAGGACGAGGCATTTGATGAAATTTCAGATGAGGCTAAAGACTTCATCAGCAATCTGCTGAAGAAAGACATGAAGGCTCGCCTCACCTGTGAGCAGTGTTTTCAGCACCCCTGGCTTAAACAGGACACCAAGAACATGGAAGCCAAGAAGCTCTCCAAGGAAAGGATGAAGAAATACATCCTGAGGAGGAGGTGGCAGAAAACAGGGCATGCAGTGCGTGCCATAGGCCGACTTTCCTCCATGGCCATGTTGGCTGGTGTCCATGCCAAGAAGGGCCTCCCAGCTGAAGAGGAGAACCTGAAGAAGTTCCCAGAGGAGAGTGAGCAGAGGAGTCCGATGAAGCCCTCGTTTAGTTCAGTGATTAAGGACGTGGAGGTGGTGGAGGGCAGCGCTGCACGCTTCGACTGCAAGATTGAGGGTTATCCTGATCCTGAGGTGGTGTGGTATAAGGATGACCAGCCTATTAAGGAAACGCGCCATTTCCAGATTGATTATGATGAGGAAGGGAACTGCAGCCTGGTGATATCTGAGGTTAGCGGGGATGATGACGCCAAATATACCTGTAAAGCAGTTAATAACCTCGGAGAAGCCATCTGTACAGCTGAGCTCATTGTAGAAGTCatgggaggagaggaggaggaggaggaggaagaagaggaataaGTGGTAAAAGATGAAGGGACGGTCTTTGGTTTTCTCCTTGCTTTCTTATACTCACTGGTTTTGTTTTACCCACATGGACTGATGGAGGTACATTGAAGGCGGGCTTGCATTTCCCTGTGATTgcacttttacttttttctttttaaatagaTGCAGTGGCAGGTGttaaagtatttataaaattacattCCAGACATTCTTATGTGATAAGATATACATCCTGCTAAATtgtgttcagttttattttgcttcttaACCAAACAATCCCAAACTcacaagtgtgtttgtgtgctattTCTCCTTTACAATGACTGTATGTAGAACTATTTAATCATGGACAAGTTAGCTTTAATGCATTGTTGCCACTCATCACCATCTTTTAAAACAGCACTTAACTGTTACAAATAACTGAAAACACATCTTAAAGGTTTTACATCAGATATGTaagtatattatatttctttatttttacgATACTACTTTGACCAACTGTAGATTACATTGTAATGAGAACACTACAACTGTAGTAACTCACTGTTactgaataaatgttttttttaaatctcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99271 lncRNA downstream 207678 16409428 ~ 16409893 (-) True G83614
TU99247 lncRNA downstream 241285 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XR_004578163.1 lncRNA downstream 389134 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 540951 16074499 ~ 16076620 (-) False lmo7a
TU99103 lncRNA downstream 544500 16072840 ~ 16073071 (-) True G83474
TU99680 lncRNA upstream 290244 16965511 ~ 16966173 (-) True G83953
TU99803 lncRNA upstream 452043 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 632302 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 648778 17324045 ~ 17324878 (-) True G84182
TU99960 lncRNA upstream 657225 17332492 ~ 17346350 (-) True G84189
XM_026910878.2 mRNA downstream 3388 16562674 ~ 16614183 (-) False fmnl2a
XM_026910888.2 mRNA downstream 3388 16562674 ~ 16614183 (-) True fmnl2a
XM_026910895.2 mRNA downstream 3388 16564270 ~ 16614183 (-) False fmnl2a
XM_026912793.2 mRNA downstream 101284 16472059 ~ 16516287 (-) True galnt13
XM_026946587.2 mRNA downstream 160359 16429932 ~ 16457212 (-) True kcnj3a
XM_026912782.2 mRNA upstream 326851 17002118 ~ 17025530 (-) True tlk1a
XM_026911166.2 mRNA upstream 352970 17028237 ~ 17039813 (-) False mettl8
XM_026911173.2 mRNA upstream 352970 17028237 ~ 17039813 (-) False mettl8
XM_026911159.2 mRNA upstream 352970 17028237 ~ 17039813 (-) True mettl8
XM_026913150.2 mRNA upstream 376790 17052057 ~ 17071808 (-) True itga6a
TU99188 other downstream 396705 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 1540376 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1780178 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2064112 14552451 ~ 14553459 (-) False med14
TU96950 other downstream 3900902 12713199 ~ 12716669 (-) False hspbap1
TU99754 other upstream 353040 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 2805853 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2893484 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3551461 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4460779 21136046 ~ 21144621 (-) False phgdh

Expression Profile