RNA id: XM_026911778.2


Basic Information

Item Value
RNA id XM_026911778.2
length 789
RNA type mRNA
GC content 0.49
exon number 5
gene id atp5mc3a
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17556819 ~ 17560073 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCGTGCGCAGGCGCAGTGCTTCCGGTGTTTCGACCTCTGCCTTCGGTGAGTATCGGAGATTCTGCAGGGAAGCAAAAAAGTCAATCCTGCTTCATCCTCGCTCCATAGCGTCTCTTAACAGTCCCCGGCTGCTGCAATCctaagaggattaaaaaaaaatacacacacaccttaaattCCACAATGTACGCCTGTGCGAAATTCGTCTCTACACCTGCCCTGgtcCGCTCTGGATCCCGGGCTTTGTACAGACCCATGTCTGCCGCTGTACTGTCTAGGCCAGAGGTCAAAACAGAGGCTCCTGCTGCTCTGCTGCCCCAGTCTCCCCTCACCCAGGTGTGTCTGCGAGGCTTCCAGACCAGCGCAGTGAGCCGCGACATCGACACTGCCGCCAAGTTCATTGGAGCTGGAGCCGCCACAGTCGGAGTGGCTGGATCCGGTGCTGGAATTGGAACTGTCTTCGGCAGTCTGATCATTGGATATGCCAGgaACCCATCTCTGAAGCAGCAGCTCTTCTCGTATGCTATTCTGGGATTCGCTTTGTCTGAAGCCATGGGTCTCTTCTGTTTGATGGTTGCTTTCCTCATTCTGTTTGCCATGTAAAAACTTACTGCAAGTGGCAACGTACGCTGTACTCAATTGTGAATTCACAGTTGCTACCAAAAGTATCTGCTCTTAATTGTCCATGTAGAAAGAAATGCTCATTTTCAATGTCCACTCTCTCAAAagaataatgtattataaactTGTAAGcaattacaaaattaaaatgtgtatttgaaCTGTT

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100003 lncRNA downstream 125388 17407218 ~ 17431431 (-) True LOC117597450
XR_004578290.1 lncRNA downstream 125497 17408749 ~ 17431322 (-) False LOC117597450
XR_004578291.1 lncRNA downstream 125497 17408749 ~ 17431322 (-) False LOC117597450
XR_004578289.1 lncRNA downstream 125497 17408749 ~ 17431322 (-) False LOC117597450
TU100005 lncRNA downstream 164872 17391684 ~ 17391947 (-) True G84227
TU100221 lncRNA upstream 135275 17695290 ~ 17697086 (-) False evx2
TU100224 lncRNA upstream 166638 17726653 ~ 17727997 (-) True G84394
XR_004578231.1 lncRNA upstream 180622 17740637 ~ 17744020 (-) False LOC117597384
TU100243 lncRNA upstream 180624 17740639 ~ 17744025 (-) True LOC117597384
TU100258 lncRNA upstream 273360 17833375 ~ 17833589 (-) True G84411
XM_026911759.2 mRNA downstream 654 17529937 ~ 17556165 (-) True atf2
XM_026912706.2 mRNA downstream 33768 17486048 ~ 17523051 (-) True chn1
XM_034304693.1 mRNA downstream 33774 17486048 ~ 17523045 (-) False chn1
XM_026947803.2 mRNA downstream 74810 17473115 ~ 17482009 (-) True LOC113547453
XM_026913155.1 mRNA downstream 84602 17465688 ~ 17472217 (-) True wipf1a
XM_034304793.1 mRNA upstream 107551 17667566 ~ 17679161 (-) False lnpa
XM_034304789.1 mRNA upstream 107552 17667567 ~ 17679161 (-) False lnpa
XM_034304790.1 mRNA upstream 107552 17667567 ~ 17679122 (-) False lnpa
XM_034304791.1 mRNA upstream 107552 17667567 ~ 17679035 (-) True lnpa
XM_034304792.1 mRNA upstream 107553 17667568 ~ 17679161 (-) False lnpa
TU99754 other downstream 516976 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1335953 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2479624 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2719426 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3003360 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1921105 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2008736 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2666713 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3576031 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3576031 21136046 ~ 21144621 (-) True phgdh

Expression Profile