RNA id: XM_026911906.2


Basic Information

Item Value
RNA id XM_026911906.2
length 1836
RNA type mRNA
GC content 0.42
exon number 3
gene id tsc22d1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15864043 ~ 15892972 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcagatttttcagcaCAGCGGAGATGAGCTGACCTTGGAGAGCCTTTGTGCGGCGGAGGTGGATGTGCGCGCTGCTGAAAACCAGCCTTTCTTTCCGAAGGTCGACTTTTCTCACCAACCGATTCAATGTGAACCGCGGTGAGGCTATACAACACCCGCGCATCGCTTAACAGTGTCAGTTTTCTCGCTTCTGTCTCGGTGTATATGGACGAAATAGCATGAATTCTCAATGCTATTCGGTGGCGATGGATCTTGGTGTATGCCAGCTAAGAAATTTTTCAATATCTTTTCTGTCATCACTGCTGGGAACCGAAACTTCCTCCGTGAGGCTCGAcaatagCTCTTCTGGTGCCAGTGTTGTGGCCATAGACAACAAAATCGAGCAAGCAATGGATCTAGTGAAGAGTCACTTGATGTATGCTGTTCGAGAGGAAGTGGAGGTGCTGAAAGAGCAGATCAAAGAACTGATAGAAAGAAACTCTCAGCTGGAGCAGGAAAACAACCTGCTGAAGAATTTAGCCAGTCCGGAGCAGCTGGCACAGTTTCAGGCCCAGGTCCAGAGTGGTTCTCCACCGTCGTCCACGCAGGGAACACAGCAATCAGCGATGGCGGTGCAGCAGCTCCCTACACAGAACTCTGGCCCCTCAGTGTAACATCCAAGTTTCCTGTGAAGAGGAATGAGTGGTCAACTGAGCTAAGGCAGACTTCACTTATAGAACACGTACGCCTCTTTCACAAGAGGATTATGTCAAAGTTTGCACATATTTAAAGTCTAAGAACTTGATAAAGGCTACACTGCGTTGCTGTACACACTGCTGACAGTCCAGTAGATTGCTGACATGTTGGATATTGCCAAACTCCATGGATTGTTACTGttgggaaaaagaaaattcGAAGTGGACACAACTCAAATCACTGTGCCTGTGTCTAAAGGATTTTAAGCGATGTCATTTTTCAGTGGTAACTCTGGCTTTGTAATGGTGTTTCCATACCTCACTCAATTTTGTAGTGGAAATGCTGATCAGTCTTTTTTTAAGACTCCAAAAAGCAAGCACTTTAATGATGACAAATGTGAAAATTCTTTGTTGAACAACTAATCAGTGCACCATCAACTATGTGGAAGGTGTATGAGATGGTGTCTCAATTATTTGCATTTGGGTCATCATTATACCTGGGTGAATGAAGGGAGTAAAGTTGCCTAGGAGGGAGGTATTGATTTTCAGTATTTAACATTGAATTCCTTATTCCATCTGTTGCAACTTAAAAGCTGCTGTTTCAGTGCAGTGACTCACAAGAATCTGAGGAAAAAGATGTTGAGCTGAGAGAATGGATGGAAGAATGAATGTGGGCTCCTGTATATCCTTGTATATTTAGTGTAAGTAATCTGTAAAATAGTGATATTGTGAGAAACACTAAGAGACACTATTTGGGTTGTACAAACTAAAGACTGGGTTGTTGGTTTGCCTGaaatatttgacttttttatGCTGTTATACAAGAACGGAGGTTTCAGTCTTAGGATATTTACAGGACAAAAGACAACTACTCAAATTCCTGGCTGTGTTAACACCTACTGTAAACCTTGTTCACTTGAAGTTATTTGAAGTATATTGCACCCATgtgatttgtttctgtttttgacaGTGAAGTACTCTGGAGATCAAACCTTCAACTTAGTTATTCTGAATATCATTAATAACTAATATGCATTATtactgcattatatatataagttgTATGCTTATGTTGCGTGCATGGCTCTCAAAACCGGTGATAAGGTGTAAAATAGTTCAACTGCACTTCACAACtctcaataaaatgtttaaggAACCTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578248.1 lncRNA downstream 5994 15854060 ~ 15858049 (-) True LOC117597420
TU98774 lncRNA downstream 149603 15679450 ~ 15714440 (-) True G83216
TU98721 lncRNA downstream 263457 15548281 ~ 15600586 (-) True G83173
TU98718 lncRNA downstream 376209 15487083 ~ 15487834 (-) True G83171
TU98442 lncRNA downstream 489541 15371262 ~ 15374502 (-) True G82961
TU98865 lncRNA upstream 10197 15877620 ~ 15879115 (-) True G83285
TU98894 lncRNA upstream 53402 15920825 ~ 15923179 (-) True LOC113526197
XR_003402738.2 lncRNA upstream 53544 15920967 ~ 15923209 (-) False LOC113526197
TU98904 lncRNA upstream 72076 15939499 ~ 15940056 (-) True G83309
TU98901 lncRNA upstream 72176 15939599 ~ 15940056 (-) False G83309
XM_026910919.2 mRNA downstream 34025 15779527 ~ 15830018 (-) True enox1
XM_034304485.1 mRNA downstream 102739 15744507 ~ 15761304 (-) False epsti1
XM_026910928.2 mRNA downstream 102739 15744507 ~ 15761304 (-) True epsti1
XM_034304484.1 mRNA downstream 106299 15744507 ~ 15757744 (-) False epsti1
XM_026912457.2 mRNA downstream 237422 15560485 ~ 15626621 (-) True vwa8
XM_026909849.2 mRNA upstream 39504 15906927 ~ 15908431 (-) True kctd4
XM_026912773.2 mRNA upstream 78147 15945570 ~ 15948341 (-) True vgll3
XM_034304766.1 mRNA upstream 100521 15967944 ~ 15973914 (-) True pou1f1
XM_026911637.2 mRNA upstream 132254 15999677 ~ 16009824 (-) False zgc:152951
XM_026911632.2 mRNA upstream 132254 15999677 ~ 16009824 (-) True zgc:152951
TU98290 other downstream 786848 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 1026650 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1310584 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 3136018 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 352541 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1160884 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3613697 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3701328 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4359305 20226728 ~ 20237615 (-) True G85848

Expression Profile