RNA id: XM_034304519.1


Basic Information

Item Value
RNA id XM_034304519.1
length 8974
RNA type mRNA
GC content 0.43
exon number 14
gene id pou2f1b
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 10517207 ~ 10538871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCTACAGAATGCATAAACCTCAGCTTCATTAGCACAGCGCCTCATTAGAAAGTCTAATTTTGGGAGGTGTCAcgaaaatgtaaaagaaaaggcGCTCAGAGGAGACGGGAAGAAGCTACTTTACAGTTCCCTGCTCTCTGTTATTTCCTACAGAGCTGAGTTTAGGCTTAAACATGCTACAACATGTTTCTCGGCAGATTGGTGTTTGCACGGCTGAGAGCAGCTTTCTGAAAGGGAGCATTTGAAGGCACAATGGAGGATTTCCGAAACAAGTCGCACTGAATATTCtaaaagcctgaaaaaaatgcattttatcctaaaattattacataaatCTCAAAACACAAGCGCCAGCAGGCTGTGACAAGCGAAAAGAGTGGCATGTAAAAGCAGATTCTAGAATGAGTAATCCgtcagaaacaaacaaatgtgcAATGGAGAGTGGGGACGGAAACACAGgtgCCCAAACAAACGGACTGGACTTTCAGAGGCAGACGGTGCAAACAACAAATGCAATCACCAATGCACAAGCACAAGCCTTGCTCCAACAGTTGACTCTGACTCCAGCGCAACAGCAGTTGTTGCTACAGCAGGCTCAGGCGCAGCTTTTGGCTGCAGCTGTGCAGCAGCACTCAGCCAGCCAGCAGAGCAGCACCACAGGAGCGAGCATCTCTGCCTCCGCTGCAACGCCGATCACACAGATCCCGCTTTCTCAGCCCATTCAGATCACACCTCAGttgcagcagctgcagcagcagcagaaccTCAACTTGCAGCAGTTTGTGCTGGTCCAGCCAGGTCATCCAATTGCCGCCCAGCTGCAGCCAGCGCAGTTCATCATCTCACAGACGCCGCAGGGCCAGCAGAGCCTCTTGCAAGCCCAGAATCTTCTAACTCAACTACCTCAAAGTCAAGCCAACCTCCTGCAGAGTCAGCCAAGCATCACTCTTGCCACACAGCCAGCAACACCGACCCGCACGATAGCAGCTACCCCCATCCAGTCCCTCCCTCACAACCAGACGACACCAAAGCGCATGGAAACGCCCAGTCTGGAGGAACCCAGTGATCTGGAGGAACTGGAGCAGTTCGCCAAGACCTTCAAACAGAGGAGGATCAAACTGGGCTTCACTCAGGGGGATGTCGGCCTTGCTATGGGAAAGCTGTATGGAAATGACTTCAGCCAAACCACCATTTCTCGCTTCGAGGCCTTGAACCTGAGCTTTAAAAACATGTGCAAGCTGAAGCCTCTGTTGGAGAAGTGGCTAAATGATGCAGtgtgtgcagagaaCCAGACGTCGGACCAGGGCCTGTCCAGCCCTAGCTCTATTGGCTCCCCTGGGCTGGGCATGGAGGGCCTCAACCGCCGTCGGAAGAAGAGGACCAGCATCGAGACCAACATCAGAGTGGCCTTAGAAAAGAGCTTTCTAGAGCAGAACCAAAAACCTACCTCTGAGGAGATCACCATGATTGCTGACCAGCTGAACATGGAGAAGGAGGTGATCCGTGTGTGGTTCTGCAACCGCcggcagaaggagaagaggaTCAACCcgcccagcagtggcagtgctGCCAGCACCCCCATTAAAGCAATCTTCTCCCCCTCCACACCCCTGGTGCCTAGCACAGCCAGTCTTGTGACCAGTAGCACCTCGACTACACTGACTGTAAATCCTATTCTGCCTCTCACCAGCACGAGCATCTCCAGCATTGGACTCACTGGCACCACTGTGGGCTCGGCAACTACTAAGGCTGCATCCGCCATCTCCACGGTGCCTGCTGTGACCACGGCAACCTCGTCGCCCTCACTCAGCCCCTCCACCAGTGTGCCACAGGCCTTGTCGGCTGAGTCGGTGGTGACTCAGGAGGCAGCAAGCACCGTTACCCAGGCACCCACCACGCCGGTGAACACACTGGGCACAGGCCAGGTAATGGTGGCCGCGTCTAGCCTGTCTGCCGCACTGCAGGGAGCTGCACAGCTGCCGACCAGCGCTAGCATTGCAGCCATGGCTGCAGCCGCAGGCCTCAACCCAGGCCTCATGGCATCTTCACAATTCACTCCTGGTGGGGCTCTGCTGAGTCTGGCTCCTGGTGCTCTGGGCAGTGCATTGAGTCCAGCACTGATGAGCAACAGTACTCTGGCTACTATCCAAGGTGTGTGGAATGCTCTGGCTTCAAGCGGGACTCTGCCCATCACCTCTCTGGATGGCAGTGGGAACTTGCTTTTTGCCAACGCCAATGCTGGCAGCACCCCGAACCTGGTGACGGCGCCACTCTTCCTAAACCCGCAAAATCTGTCACTGCTCACCAGCAATCCGGTGAGCCTGGTGTCTGCTGGAGGAGCTGCAGGGGCTGCTGGGGCCCTCAATCTGCATGTTGCTGCAGACCACAATGCTGTTACCACGGCAACAGTGCCCGCCTCCACCATCAGCACCGCCTCCAAGGCCCAGTGAAAGCCCCACCCACCTTggttctcctccttctccttctccttctcatcAATCATTATTTAATCCCTTTGCTACCACCAAAAAGAAACTTACTAAAATGAAGttttatattatgttaatatttttgtttctttttcataccttcatcttttattttagaTGTTCTTTATTTGAACTTGTTGCCTGCTTTGATTTTTCAGCAACAAACTTCTTGAATGTTGGCGTTACAAGGGAGCCTAGCGTTAAGATGGCCAAAACTGAACTGTCTCTGGGCTGCACGCTTGCTCAATTTGTAATGCAAAGACGTTTTTATTTGAGTGATTTTAACTCACTCAACGTTTTGCATTTATATCTTGTTATTTGATCCTAAAACACTCCTAACCAAAAACACAttactttattgtttattttttaactgtcGAGTTACACCTTATTGATAGCATTATTAGCATTTACTGTGATCGTCATTACTGAGGAACTTTTAAGACACCTTTTCATTTCAACTGTTTTTGTCAGAGGTGCTGCTTTGCAGGCCTTTGGAACCTTCatatcaaaactttttttttcccctttggcTTATGGTTTCTTTTATCTGATGCAGCTTTCGTCCTATATAATTCTCACATGTGGTTACAAGGCTTTAAAGGAGTAATAAGTGGCTGTGATACGGTTTCATTGCTTTAAGGAATCGTTTGTATAGTCGCGGTCTCGAAACACTGATTTAACAGAGGAAATTCTCAATACTTGGTAGCAAAGGTTTTTAAACGCTTTCCAGTGTGGGTCTGAAGTGTGGACCCTGAGATGGGCTTATTTACATAGGATAAATAGCTTTAAAGGATTGCATGAGCAGTCAAAGGTGACAGGTCTTGGGCTGCAATAACTGGGCAGTGTAGACCTCAGTCACTTGTAAAGAATGTGGAGATGGTGCACTGAGAGCTCCTGAAACTGTTATGCTACTGCTTAGTGGCATGACCATTTGATGCCTAGACTGTGACCTGTATTTGTCCCAAAGTCTGTCAGCCTCTTAAGGTCTTCCCATCACAGGGTGTGCTGTCTGTGTAGTGTCATGGTGGGGTTATAGGAGtttgctttttgtgtgtgttttcatggtTTAGGTCATATAGGATGATGCCACCAAATGTCTGGTGGCAACTGTAACATTTCAAGAAGCAACTTGGCCCAGGGGAGGAAGGCCTGGGTGTCCTCTGTCCAGGAGGGTTTTAAGGTGTTTGTTTTTCTACTTGTGCACAGTacctgtacaaaaaaaaaaaaaaaactggatttgAGAACTGTGGTCTGCCTGGTGTTTAGGGGGAAAATGTCATGTTCTGAGTAAgaggtcttttttttatttttaaggtcTTTGGCTGGCCTCTCTTTATGATATaccaaaaatatttgttaaaacatGTTGCTGTATATTACCATTGTAGCGTAGGgtaagtttaaatatttataagtcGAAGCTCTTGGTAAACCACAGGAAATattataatgcaatattttgaaGATCATTTCCAAAGacaaaactattttttattttggttgagATGGCTTCCCCCTGCTCTGctctgtttgtttgtgcagCTAACCAAATAACCTGAGTGGATGGGGAGGGAGGTGGTTTGAAAAGGGAGGAGGTGGTCAGGACCATGCACTGCAGCAAAAACACCCCAAAGTAACCTGACCTCCTCCAGGTCATTGCTGAGAAGTCTTTGTGAGTGAGAGGTGAGAGGGGGTAGGGCTGAAGCAgatgccctctctctctccccctaaTAAAGTTAATATATTTCAAAGATGTGCGGTGTGCGGACGGAAACAAGGTGCTTTTTTCTTACAGGTTCTTGTTTTCTGCATGCTTCTAAGATGCCAGagtgttttgtttcttaatAGACTGAAATATCCACTATCTAGGCAGGTTTGGGTCAATATTTAAGAGTTTTAGCAGACTGATCTGTTATTCTCCCCTTACCAATATAATTCAGCCATGATGTAAAGCTTGAACCAAAGTCGTTTTCTTGCTAGCTGCTGTGCCTGTGGGGATCAGCGAAATGCTGGCCACACTATCACCACTCTACACTACTGACAAGCTTCCTCATGTCTTACTTCTGTTCTTTACCAAACTCCTACAACTCATAATGAACATACTGAAATGAGTTGTGTTTAGCTTTAAAGTATAATACAGCTTGGGCCATGCTtacatcttgtttttttcccccaaggtATTTAATGTTCAATACCATAGGTAATGGCCTCTAAGTGCCAAGTATACCTCCAGTTGTACTTCTTACAGTGCTCTACATTTGATGCAGTCATCAACTTGTAGTCCTAGAGGCACCTAGATCAGATCTCATCCTCAGTTCCTCCACTGGAATTCACTTGTGGCATTAGCTTTTACACTCTTGCCATTGTAGTTTATAAGACTGTGTGGACTGTGGAAAAATCCCAAACCACTCCTTTTTTTGACTGTCCTCTAAGCCTGGCACAGCACtggtacacacaaacacacaaggcTTTAACGGTACATAGTGTGGTATACTAAAACCACTTTCTGCATGGATGGAGTTAATATGCAGTCAGGATTCAgctattgttttaatttttaatttattttttaaagtagacTGTTTTTGGTTTAGCCTGGATTCTGGTCTTTCAGCTCCTTAATCATACATGCTTTACCAAAAAAAACGTCTAATTAGAGAGTGCATGCTCTGTCAGCCAGACATCAAGTCACATATAAATTAACTATAAAAACATACCATGTACCTCTGAAGCTCTCTGGCATTTTGAAATTTCATCCTggctccctttttttttttttttttttcttcaaacttAGCCCCATCCATATGGGCCTGAGGCTTATTGTGATACTTTTCCTGTTACCTTGTCTGCTGGTTTCTATCCAATTCAGCCTTGcttgtactttttaaaattctttttatttgtattaccTCATCAGCACTTAAATGGAAGGTTCGCTTTAAGCAAAATGGCACCAACAGACAAGAACTTTTAATGTTTGAATTATCCTTTTAAAATTTTCAATACTGCATAAAAAGAAATCAtcaatgaacagaaaaaaaaaaaactactactgCTGTTTCAAGTACTACTACTTATAGGGTACCtccagttttattattttattgtcctACTTGCCAAAGTGAAAAAGCCTGTGTCTTTGTGGCTTGTTGCTGCTCACTCCGCTGGTTCTGTCCTGAGGCTGCCACATGGCCTTACGGGACTTGTAGTTTTATGTATTGCCGTTGTTTTAGTGCAGTGGTGTGGTGTCGGGACGCATGGGTagttactgaaatatttatctGAGGAACGACTTAAATAATTAGAGAAAGAACTGTTTCCCTAAAttctatatatagatatataaatatacatatgtaatgtactcatattttataattcaaCTATTATAAAGATTGAATGTAGTGTTTTTGTCATGcttattcacaaaaaaaaaacaaccaaccaaaaaaaaaaacaaaaaaaacaaataatactaATTTCGTTAGTTTTATGATAGCAattgaactgaaactgaaaacccTCAAGACCAAAAATTTAACACCACACCCTTTGGATGTGGAACTAGCTGTCATTTACACCCTCCACAATTAAATATAGTTTGTTGAATGAGGGGGCTTGCCATGGTGCTCCTAGCTTTTACTGTTGCCTGGAAAATGGACCCAAAAAGCACCTGatcttaacttttttttattgacttcATTTGCCGTGTTGTTTTTAACAATCATTTCaacttatttactttattttatatatttttttgtatagcaTGAGGGAGCAACATCACTGGCTTTCTTAGTTTAACAAAATTAACTTATCCTTATCATTTATGCCTTACTATTATTTTAGAAGATTGATGCTTTGTAGCAAACTATAGTATGTTGGTTGGTGAGtgcatatttttgtgtgtgtgtgtttggatgagTGAAAGGATGCATTCCCGCATGTTTTTATGTCTACATCACATATTGATCGCTGAAATAACGCTGTGAGTATcggacattttttttgtttttgatgtttgaACATACAAAATGTTGCTACCTGTTATTTTGGTGTGACTTATGCAGGTTAGAAACCTGTTGCAAAAAGCTTTACTAATAACCCAACTCCAGCTGTTGTGTAGGTGAACGGGGTTGTCTTAGTTCTTGGTAGCTGTGCATTTGCTTTCAGAGGTCATCCTGCAGGGAAGATATTTCTCTGAATTTGATTAAACTGATTGGAAGTAAGACTTCTAACTAATGATCAGTTGGGAaactaataagaaatattacCAACCTTGATGTCCAAAATTTCTGAAAGCATTTCTGACTGATTGAGGCAATGGTGACCACTTGGCTTTATGCTTTTAACCTGTGATTGGATTGAGTGGTGTTCCAGAGCCAGATACGACTGATGAGGCTTTGCATTTCTGCAGCAGATCTGGTGTAGTGTTAACTGTAGATAAGTGCTCTGATGAGTGGTTGCATTAGAGATTTTGGTTTTTGGAATGGCTGTAGTCATATAGTTTCTGGCCTGTAGGTTGCTGCAGGAGGCCTTCAGTCCATTGCTGGAAAAGGATAAACATGGAAGCAGTCATGGACCCAATGGCTGAGTTTGCTGGAATGGGTAAAGGAGCTGTTGTATACCTCATTTGTAACTCGAGACAGAGTAAAAACTTGCTTTAATCtattttgaaaaacaaacaagcaaagtaaacaaaagctattaaaaaaaatccctgtcCTGAAAGAGGAGCCTGCAGATGTCTATTTAGCGTATAGGGTGAGGGTCCAGCAGCTGCTACGgagacacactacacacatatacacttatTAATGTCAAACTTGTAGAGTATGACTCTCGggttgatttgttttttatgttttacccTTACATGTAGTGAATGCATATTATAGCCATATTTATTTTGCACCTTTGTCTTTGTAGTTAACCttgtagtttatttttatgatttgaCAATCGTCTCCTTAATGTCCTTCATTTGTATGAATGTAACTGCAGGGCTTATttggtgtgtaatgtgtgtgtgtgtgtgtgtgtgtgtgtgacctcttCGTGGCCCTCACAGTCCTCAGCCCTCATCCTCTCCTGTGGTAACCAAAGACTTACAAAGTGATTGTATGGACTCAGCTGTCTCTCCTTCTTACCCTCCCTTCATGGATCTGAGGTCATAAGAAGATGATAAAGACAGAGGGCAGGCTTCTCCAAGGGACTTGTAAAATTAACCCCTCTTTGACTGGGTGATGTTAGTTAGTACACACTGAAGGACATCCTGTGCACACTGCAACCTGCTCAGGATGAACTGTCTGCTCTCTGGATTCAATGCCTTTGTCTTTATAGTTGTAACCAAGCAAATCTGTTTCTATGAGTGTCTCTAACCAAAAACACATCTGACCTCTCCAAGGTTACTTGTTCTGTACTGATGTCTCATTATTTCAGTGTGCTGTTTTAACTTATGTTTTACGATTTGTCTCTGCTCTTTCTGCCACCTTGATTTCCCTGTGCAACTATGCATTGTTGTCCTGTTTGCCGCTGGGGCTGTGTCTCTGCAACACTGCTCTTAACCAAATGGGTCTTCGACTCTTCACTCAGCAGCTTTATATGGAGTGTAAGGTCGACAGACGCTACAAGCTCTATCCCAAAGCaaaaatccaaatatgaaaTGTTTGACACATGCAGATACCAAAGATGACACTGTCTTTtgtcctgtttctctcttcctctctaaGCCCTTCAGCGTGTGTATTAAGGAACAGAAcccagctctgacattagtctTAACCTCAGTAATTCCAAAGCTTAGATGTATATTTTGGtatttttctgaaatacttaaggaaaaaaaaaaagcaaaaacaaacgtggcattttaaaattctgatttGTTGGATGTATTGCTCTTTTTCTGTCACAGCATGGAGTTAACTGAAGAACTGTCTTACTATTAGTAGGTTAAACAAAtagtatttttatacattttgggtgtgtctgtgtatgtgatTATCAGTTTCACTGCCCAAGTTaccattgttttttctttttaacaaatgaggaaaaaaataggaaaatgtACATAGTGCTTCAGTCGAGGACTGTAAATGGTCATTCTCATTTCCTACAGCTAAAGCTTTTTTCACCAATGTCATAAAGTAGATTGTATTTCTGTGTGTCTTATCTGAACTCTAAGCCACTGTTGTAATAGTGAGGCTCATTTCTTGTATCCTGAGTATCACTATGGAGCAGGGCTTCAATGCCTCTCACTCTGAACACAAGCTTTTGACTGGACTTTGCATTGGCTACATCATGGTAGCTTAGAACTGACCGATTGTGTAGAAATATAAGTATGTGAATCAGGATACATGGTAGATTAGATACATTTTgtctgctgtattttttttaatatataaagataatctttactgtaactgtacagATCTCTTTTGTTGTAAACATCATTAAACCATTTTCCAAGTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94834 lncRNA downstream 739818 9775806 ~ 9777389 (-) True G79903
TU94864 lncRNA downstream 743930 9772634 ~ 9773277 (-) True G79933
XR_003402716.2 lncRNA downstream 750631 9764485 ~ 9766576 (-) True LOC113525888
TU94854 lncRNA downstream 759038 9757930 ~ 9758169 (-) True G79923
TU94851 lncRNA downstream 761242 9755741 ~ 9755965 (-) True G79920
XR_004578184.1 lncRNA upstream 84342 10621537 ~ 10622344 (-) True LOC117597353
XR_003402728.2 lncRNA upstream 181939 10719134 ~ 10721674 (-) True LOC113526087
TU95462 lncRNA upstream 235193 10772388 ~ 10775221 (-) True G80463
TU95463 lncRNA upstream 238847 10776042 ~ 10776341 (-) True G80464
TU95531 lncRNA upstream 371978 10909173 ~ 10931379 (-) True G80526
XM_026913031.2 mRNA downstream 11423 10501955 ~ 10505784 (-) True lamp1b
XM_026912739.2 mRNA downstream 21434 10491930 ~ 10495773 (-) True commd6
XM_026948040.2 mRNA downstream 33338 10452997 ~ 10483869 (-) True tbc1d4
XM_034304864.1 mRNA upstream 58245 10595440 ~ 10614287 (-) False LOC113526229
XM_026913098.2 mRNA upstream 58245 10595440 ~ 10614285 (-) False LOC113526229
XM_034304862.1 mRNA upstream 58245 10595440 ~ 10614285 (-) False LOC113526229
XM_026913096.2 mRNA upstream 58245 10595440 ~ 10614285 (-) True LOC113526229
XM_034304863.1 mRNA upstream 58245 10595440 ~ 10611340 (-) False LOC113526229
TU94731 other downstream 862752 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 948087 9568555 ~ 9569120 (-) True G79826
TU94713 other downstream 985539 9528304 ~ 9531668 (-) False LOC113525856
TU95376 other upstream 71118 10608313 ~ 10609042 (-) False LOC113526229
TU95628 other upstream 432222 10969417 ~ 10971157 (-) True G80600
TU95687 other upstream 481084 11018279 ~ 11035561 (-) True G80656
TU96948 other upstream 2176004 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 2176004 12713199 ~ 12716669 (-) False hspbap1

Expression Profile