RNA id: XM_026912457.2


Basic Information

Item Value
RNA id XM_026912457.2
length 7314
RNA type mRNA
GC content 0.51
exon number 45
gene id vwa8
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 15560485 ~ 15626621 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCGATTATGCGGCGCATAAGTTTTGTTCTTCAACTACTTTCCTCCGCAAGACAGCTGCTGTCGGCGGTTTTGGGCAGTGAACATGAAGGAAAACACTAAATAATTCAGAATGTCCACTTATTTTGCCGTTTGACCCAGGTATTTTCAAAAAACCACCATGCAGtcacacattttattcaaaGGAACAGCCGCAGCTGTGGCTTCCCGAAGACTCCGGAACATTTTGGGTCCCGTCATGTCAAGGGAAGGCTGGAAGTGGAGCACGCATGAGGtcaaacacttaaacacttcgTCAGGTGACACAGTGAAGATAGGGGAGATCTCCTATCAGCTTAAGAAACCCAGAAACCCTGAGCTCGTACCAGTCAATCACATGACAGAATCCATGCCACAGACAGTTGCTCAGCACCTTCGCTGGATCATGCAGAAAGACCTGCTGGGACAGGATGTGTTTCTCATTGGTCCTCCTGGCCCACTGCGCCGCTCCATTGCCATGCAGTATCTGGAGCTGACGAAGAGAGAGGTTGAGTACGTGGCTCTATCCAGAGACACAACTGAGACTGATCTCAAGCAGCGCAGAGAAATCCGCTCTGGCACAGCCTTCTACATAGACCAGTGTGCTGTGAGAGCAGCGACCGAGGGCCGAATTCTGGTTCTGGAGGGGCTGGAGAAGGCCGAGAGGAACGTGCTGCCTGTCCTCAACAACCTGCTGGAGAACCGCGAGATGCAGCTAGAGGACGGACGCTTCCTCATGTCTGCCCAGCGTTACGACCAACTGCTGCAGGAGCACACTAAAGAAGAACTGGACCAGTGGAAGATTGTGCGTGTGAGTGAGGATTTCCGTGTCATTGCTCTGGGGCTGCCTGTGCCACGCTACAAGGGCAACCCTCTAGATCCACCCTTACGCTCGCGCTTCCAGGCTAGAGATGTCTACTACCTGCCCTTCAAGGACCAGCTCGAAATCCTATATAGTGTTGGACCAAACGTGAAAGCTGAAAGAGTGTCTCAGATCCTGTCATGTGCTACTACTCTTTGCTCGCAAGAATCTGCCAATCTGGGTCTTCCTGACTTTCCTGTAGACAATCTACCGTCTGCTATCAAAGTGCTGGACTTGTTCCCCATGCTGTCCGCACAGCAGCTGGTCCAGAGACTCTACCCGTATGAGGCAATGCTGGGAAAAGAGGGTCAAAAAGCTGTGGAGGGTGTGCTCAGTcgtTTTGAACTGATGGATGGAAAGAAGCAGCCGTCTCCCTGTGCTGTGGTGCAAGTGGAGCCAGGGGAGACAGGAGAAGCATCGGTTACCCTCAGCATTGCTGACAAAATCATTTCCTTCCAGGTTCCAACAGGATCACGGCCCCCTCGGCCACCCAACAGCAGTCCATCTTTCATCAGCACTCCCACCCACGCTCGCCTGCTAGCTGAGATGATGCAGTCTCACCTCGTCAAAGACATGTGTCTCATCGGAGCCAAGGGTTGTGGCAAATCTGTGATTGCCAAAGAATTTGCCGAAATGCTTGGGTATAGCATTGAGCCAATCATGCTCTATCAGGATATGACTGCGCGGGACCTGCTCCAGCAGCGATACACGCTGCCTAATGGCGACACGGCCTGGAGGGCCTCTCCGCTGGTCAGCGCAGCTCAGGAGGGCAAGCTGGTGCTGCTGGATGGCATCCATCGGGTTAACCTGGGAACTCTGGCTGTGCTGTCCAGGCTGCTGCATGATCGAGAACTGGCTCTGTATGATGGAACTCGGCTACTGAGGTGGGACCGTTACCTCGCCCTGAAAGAAGAGCTCCAGCTGACTGACCATGAGCTGCAGGAGAGGCGTATCTTTCCCATCCATCCTTCATTCCGGGTTATAGCGCTGGCTGAGCCACCGGTGGCAGGCAGCAGTTCTCAGCAGTGGCTCAACCCTGAGCTCCTCACCATGTTCTTCTTCCATGCAGTCAAACCTCTTGCCAAGGTGGAGGAGGCGGCAGTTATCCATGGAATGACTCCGAATGTTCCAAAAGAAGCAGTGGAACAGTTGCTGCATTTGACCCACAGCCTGAGAAGCACCAACGACCCAACTGCCCAGTCTTTGGCTTCTTCATTGTCTACCAGGCAGCTTTTGAGAATTTGTCGCCGTCTGTCTCAGTATCCTGAAGAAAGCATCGCTCATGCTGTAAATAAAGCCTGCTTGTCTAGGTTCCTCCCTAGCCTGGCACGCTCTTCTCTGCAGAAAAACCTGGCGAATTGTTCGATAGAGGATCGGACTGATCGAGTGACAGACCCAGAGCTAAAACAAGACCCTACCTGCACAATTAGAGATGGAGTTCTCACCATAGGCAAGGTCTCTGCTCCTGTCTATAGCCCTGATGACAAGATGAAGGTTCCTGATGTACTTTTTTATGAGAACACTCAGCACATGATGATTATGGAGGACATGCTGAAGGACTTCTTGTTGGGGGAACACCTGCTGCTGGTGGGCAATCAGggtgtggggaaaaataaaattgtggaCAGATTCCTGCATCTAATGAACAGACCGAGAGAATATCTGCAACTTCACAGAGACACAACAGTCCAGACGTTGACTCTTCAGCCATCTGTGAGGGATGGAATCATTGTTTATGAGGACTCTCCTCTGGTGAAGGCTGTAAAGATGGGACACATTCTGGTAATAGATGAGGCAGATAAAGCCCCCACTAATGTCACCTGTATCCTGAAGACTCTGGTGGAGAGTGGAGAGATGATCCTGGCTGATGGCAGAAGAATAGTGTCAGATCCCATGGGAGCCGATTGGCGAGCCGATGTTATAACCATGCATCCAGACTTTCGCATGATTGTTTTAGCTAATCGACCAGGCTTTCCTTTCTTGGGAAATGACTTCTTTGGAGCACTTGGGGACATCTTTAGTTGTCATGCAGTGGACAACCCGAAGCCTAAGGCAGAGTTGGCTATGCTAAAGCAGTATGGACCTGATGTTCCTGACACAGTTCTCCGGAAACTCGTGGCAGCATTTGGAGAGCTGCGTGCCATGGCAGACCAGGGAACCATCACTTACCCATACTCCACTCGGGAGGTGGTCAACATTGTCAAACACCTGCAGAAATTTCCAGACGAGGGCCTGGCTAACGTAGTGAGGAATGTGTTCGACTTTGACTCCTACAACAAGGATATGAGGGAGGTTCTGATTGCAGCTCTGCACAAGCATGGCATTCCCATCGGAGCCAAACCTACCAGCGTCCATCTGGCCAAGGAGTTGCCTTTACCAGACTATAAGATGGCTGGGTATTGGACTATTAACCAGGGTGGCGGTGCACGGCGGAAACTGCTGTGTCCTACCGAATCCCATCGTATAGATATCAAGGGCCCAGTGTTTTTAAGAGTACAGGGTTATCCATTGGAGAGGCACGAGGCCAGAGCGATGAGCTTCACAGAGGAGTACGCACACTGGCAGCTCCCCATGAATGAAGTCAACATCGTCTGTGACGTTACCACTGATAACGATTTGATTTATGTGGCGACATGTAACCCCGTGTCACTGTACGCTATGCGTGAGCGGGCAGACACACTGCAATCCATTGAACTGTATGATGTCTTTCCCCGCACCATCAGTGGAGTGTGGCAGCCTTTCATCACTGTGGCTGCACTGGGCAGCCCGCTTAAGGGCCAGGTGGTGCTTCATGAGGAGCAGAGTAACACAGTGCTGCATGTGGACCTGGTGACCGGTGCCGTGAGGAGACTCGTCCTGTCCCCAGGTAAAGAGGAGGAACCTGTGCGCAAAACCTCCAACTGGTGGAATACGAAAGACTCTCAGTCAACATCCAAAATGTGCCGGGAGTTTGCCCACAAGAACTGGCTCCTGTTCTACAAAGCTGATGGGAATCAGCTGGACGTTCTGGATGTGCTGGAGGGCCAAGTCCACACCATCACTCTCCCCATCAATGTTAAGGCAGTATTCTTGGTGGCTGAAGACCGTTGGCTGTTAATTGAGAGCAAAACTGACAGGAAGTTCCTGTTGACCAAGCCCATGCACATGGGAGTAGAGGAATCAGATGTGTGTCAGCTTCATGCCATCATTGAAGACGGCGTCAGCAGTGGCTTTGGTACCAGCTCAGGGATAGAACCTGGCGCCCCTCAGGATGTGTCCAGTGAGCAGCTGCCCAATGAGAACCTCAGCGCTGCCCTGGGACAGAAGATCACCTCCCCAAACCGCCTCATCTGTGACAGCAACACCTACGCTAACATCATAGTGGGCTTTCCGGACCTGCTGTCTCCGAATGAGGTGTACAGCTTTCAGAGAAAATCATCCCTCACAGAGGGCAGGGGGCCTGACATGTTTTTTGGGTCGAGTCGCCGCACAGGTCCTGCCAAAAGAGTCAACTGCGTCAGTCTGGTAGGAGCCAATCAGGTGGTGCGAGCTCTTCCCCCTACACAAGTGCCTCTGGCTGACATCTACCCTAAAGATATCACCCCACCTTTGACTTCTGCCTACCTGGAGGTGACGGATCTGAACACCAAGAAAGTCAAGTATATTCCAGTGCCAAGGACTATGTCCATGTCTCCTTACACGGCGTGGATCTCGAAGGTGTCGGACACTGATGTGCTGATCGCTCCACTGGGGTCTGGTGGGGTTGTGACTGTAGATATGGGAGGCTATGTGAGGGTGTGGGAGACAGGACTGGACAATTTGCAGCGCTCACTGTTGGAATGGAGGAACATGATCGGCTCTGAGGATGGCCGACCTGTCCAGatcaCCATTCAGAGAGACAGTGGTCTTGATGTCAACGCACCAAAACATGGCAAGATTGACCCCATGAATGCCCCTCATGTGGGGGGTAATCAGTGGGCAGGAGGCACGGGGGGCAGAGACACAGCAGGCCTCGGGGGAAAGGGAGGTCCCTACCGTCTAGATGCTGGCCACAAAGTCTACCAGATCTCCCAGGCTGAGAAAGACGCTGTGCCTGATGAAGTGAAGAGAGCTGCGCGAGAAATGGCCGAGAAGGCTTTTAAAGAGAGATTGAAGGAGATACAGATGAGTGAGTATGACGCTGCCACGTATGAGCGTTTTTCCGGAGCCGTCCGGCGCCAGGTCCAGTCCCTACGCATCATTCTGGACAGCCTGCAGGCTAAAGGGAAGGAAAGGCAATGGCTGAAGAACCAGGCATTGGGGGAACTGGATGATGCCAAGATTATTGATGGCCTGACTGGAGAGAAAGCCATTTACAAACGCAGAGGAGAGCTGGAGCCAGAGCTGGGCACTCCTCAGCAGAAGCCCAAGCGCTTGCGTCTGCTAGCTGACGTGTCGGGCAGCATGTACCGCTTTAATGGCGTGGACGGGCGCCTGGAACGCTCTATGGAGGCTGTGTGTATGGTGATGGAGGCGCTAGAGAGCTACGAGAACAAGTTCAAGtatGACATAGTTGGCCACTCTGGGGATGGATTTGATATAGAACTGGTCAGATGTGACAAAGTGCCAAAGAACAACAAACAGAGACTGAAAGTCTTAAAGACCATGCATGCACACTCTCAGTTCTGTATGAGTGGAGACTACACGCTGGAGGGCACAGAGCATGCCGTAAAGGAGCTGGCTCGCGAGGAGGCCGATGAGCACTTTGTCATTGTGCTGAGTGATGCCAATCTGGAGCGCTATGGGATCAGCCCTGACCGCTTTGCCCGCGCACTCACCAGCAACCCTCAGGTCCATGCCTTTGCCATCTTTATTGGTTCTCTTGGGGACCAGGCCGAGAGGCTCCAGAGAACCCTGCCGGCAGGCCGATCTTTTGTCGCCATGGACACCAAGGAGATACCTCAAATCCTGCAGCAGATCTTCACCTCTACGATGCTGTCCAGTGCCTAAACACGCCCGACCACCCAAAATTCTTGTCCTGAGCTCCATGGACTCAAACGCTGCAGATTCCAGTCTTGAGATCTGTTCTGCGTTTCTACACATGactagtttttaatttttaaataaataattttacttatttaaagtGACACATTACCCACTACAGATTGTTGAGTTTATATACTgttaatacatttcatttcattgtattgtattgtattgtatgagTGTGTCATCTGTACAAATGAAAAGCTACAAAAAGCTAAACAGTGATTTTCATCTGGTGTTTGGTGCACAGACGTCTGATTGTAGCCTTAGTGCCCTGTCAAAAGAGGCCAGTGTTACATAAGACTTGTCACTTgatggatgtgtttgtgtgggttttctcaggatcctcctctctcctcaaGATCATGGAGTGGACATATCCTGTGAGGGAGAGGCAGAGTGAGGCAGAAAAATCACACTCATCTTATCACCTTATTCTCCCTGTTTAATCTCTCCCTATCTGAAAAGAAAGGAGATTCTTAAGTGCAGTTTTACTCATGTGTTTCTGTGCACACTCGGTCTTATAGATACaaagattaaaagaaaatacacagcTAATTTCTCACCCAGAGTGGATGAAAGTAGCTCACAAGAAAATTAGTGACTGACAGAGATAACTAGCCTGAAATCCCAGATAAACCGAAAGCAATTTTGGGAGACAAAGCTCAGGTTATTTTTATCTCGCTGGTTTATGACCCAGTGTGAGCCTTGCGTTTTTAAATGAACTTGAGCATGATTTTTACTCAGCTTCCTGACTTTTCTGACTTCTTGGTTTAGGTGTTTGGTGCTAGCAGCACTGATTGgaacattgctaatctgacccCTGGCATTCCCCGTTTAACTGTATGCACTCCTTTAGCACTTCTTGCGCAAGTCCACCCGCCCCTTCCTCTGGCTCAGCCTAGAATCCTCGGCTCTGTCGGGATGCATGTGTTTTTCCTGTGTTCCAAGCATGCCTTTTCCTTCCTGTGCTGCTGGAGCTGCTGTTACCCAGACAGGCTGCCGTGCGCCTCTCGAATGCTTGAGGATTCCAGGCCTGGGCTCAGGTTACACCATACTCACTGGGTGTTGCTGGGGAGAAAGTGGACCTGTAATTTATATGAGCTGAATAGCAAGCTGTGGACCGTCAGCAGGTGGCACGAACATGTGTGTGGAAGGAAGATGGATATGGCTGTTGGtcacatgtatttttatttttttcattaaactcTGGGTGGCTGGAATGGAGCACCTCTGCTATGCATTCAAGGGCAAAAGAAATAGGGAGTGAGAaacgtgtgcgtgtgtttgttttaGTGTGTGCAATAGCCATCTGTAAAGCAGTTTTTCTGAGGGGTTAGAGTTACTCGTCGACGTTAATGAGTGAATCCTCCCGCTACCCTGAAgacaaagctttaaaaataaaaacattttaagtgaTTGTTTAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K24512 VWA8; von Willebrand factor A domain-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98718 lncRNA downstream 72651 15487083 ~ 15487834 (-) True G83171
TU98442 lncRNA downstream 185983 15371262 ~ 15374502 (-) True G82961
TU98423 lncRNA downstream 348166 15209315 ~ 15212319 (-) True G82943
TU98372 lncRNA downstream 434837 15085363 ~ 15125648 (-) True G82904
TU98389 lncRNA downstream 450003 15107053 ~ 15110482 (-) False LOC117597380
TU98774 lncRNA upstream 52829 15679450 ~ 15714440 (-) True G83216
TU98850 lncRNA upstream 203508 15830129 ~ 15887375 (-) True G83270
XR_004578248.1 lncRNA upstream 227439 15854060 ~ 15858049 (-) True LOC117597420
TU98865 lncRNA upstream 250999 15877620 ~ 15879115 (-) True G83285
TU98894 lncRNA upstream 294204 15920825 ~ 15923179 (-) True LOC113526197
XM_026910423.2 mRNA downstream 55134 15442384 ~ 15505351 (-) False mycbp2
XM_026910462.2 mRNA downstream 55134 15442384 ~ 15505351 (-) False mycbp2
XM_026910478.2 mRNA downstream 55134 15442384 ~ 15505351 (-) False mycbp2
XM_026910430.2 mRNA downstream 55134 15442384 ~ 15505351 (-) False mycbp2
XM_026910407.2 mRNA downstream 55134 15442384 ~ 15505351 (-) False mycbp2
XM_034304485.1 mRNA upstream 117886 15744507 ~ 15761304 (-) False epsti1
XM_026910928.2 mRNA upstream 117886 15744507 ~ 15761304 (-) True epsti1
XM_034304484.1 mRNA upstream 117886 15744507 ~ 15757744 (-) False epsti1
XM_026910919.2 mRNA upstream 152906 15779527 ~ 15830018 (-) True enox1
XM_026911892.2 mRNA upstream 237422 15864043 ~ 15892972 (-) True tsc22d1
TU98290 other downstream 483290 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 723092 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 1007026 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 2832460 12713199 ~ 12728025 (-) False hspbap1
TU99188 other upstream 593343 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 1401686 17028307 ~ 17039843 (-) False mettl8
TU101475 other upstream 3854499 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 3942130 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 4600107 20226728 ~ 20237615 (-) True G85848

Expression Profile