RNA id: XM_026912499.2


Basic Information

Item Value
RNA id XM_026912499.2
length 1577
RNA type mRNA
GC content 0.42
exon number 8
gene id si:ch211-218d20.15
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 14534411 ~ 14537191 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccctgccgCGCTGCCACATACAGGGATTACGTCATCGCTGGCTCTGTTGTTGAGTATGATTTTCGTAGAGCcggaataaaaatgtgttttccgCTCGGTGCGTTTGAGGTTTAAAAGCAGTAGTATTTAAAAGATGTGTGGAAGGGATGATGCTCACGGGGATGGCTGTGTCTGAGGGATGCAGGGATCATAAAGAGGTTTTAAACGGCAAAATCCTGACAGAGCTGAGAGGATGACAGCTGTCAGTTTATCAGCGCCACTTTGTCAACCATGCGCTTATGATAGCAGAttcaaagTGGAGGTTTATCTCAACAAGCCGCTGAGGCCCATCCACCTGAGCCCAGAGCAGGTAGCACTAGACATGCTGTGTCTTTGCAGCCAGCTGGACCTCCTTGTCAGAGCTCAGGTCCTTCAGCAGTCCAAACTGGACATGAGTCCCGAGGAATTGGAAGCATTCCAGAATCAAGGTGCTGAGATTATCGATCAGATGAAGCAGTGCCTTGAACACTTGCCCAAACCTGCGCCGTTGCTGGAGGACTACCTAGACATTGCTGGATTGTCTCTCATGTTCCCTCGAGTAGAAGTCTTCATTATCCATGGAAGTCCTGTGGATATGCTGGAGAGACCAGCATTGGATGGCTATTTCCCTCACCTTGGGAAGCTGAACCAACTGCTGGGGCTCAGTCAGCAGCTAGATAACGATGTGAAGCACCTCGGAAGACACAAATATATCGCCCATCAACTTGCTGTTCTATATCAAGCACTTAACTCCTTCAAAGATGTATTTCCACTGTCGGATATAAAGAAAGACATTGAAGCCAATTTTAAGCAGATAAAGATGTCTTTAGTAGCAGAGGAAGGATCCAAGCAAGAACCACAGTTACCAGCCCAGTACATCAGATGGGTATCACAAGTCACACAGAGCATAATGTCAGCCATCTCTTCGCTTCCAGAAGAGCTCACTGAAGAACTCAGTCCAGTCATGGCATTTGTCTCTGAGTTGTCctgacaagaagaaaaaaaaaattccatggtGCAGTAGATAGGGAGGCATAAATGTAGGCAGTCTGTTAGTAACACTTTAAGAATATTGCactgttcattttgtttataaaagtgCAGCAGTCCATGATGACTGTTGTAGTATAGTCAGTAGTGTAGCATTACGGTGCCTAATTACAggcaagtgcaaaagtttgcacacccttaacATAAAATGActtgattattttaaatgttttcttgtgTTTACTCgtacatttcttttaaaacttCTTAGATTTTTGTAggtaaattgtaaaaataaatgcaaattctTCCGCCATTTTAAAGCACACATTTGCACTAAAGTGTATCTTTTTTTCTCGAGATATCCTCAGCAATTCACCAGTTATCCATCATTATCATGAAAAGAGCTGTTCGAAGAGTCGCACAGAGTCAGCTGAAAGAGAATGAACTGTTTAATATGATTAGTTACTACTGTTAAAAGGCTTGTTCTTTTACAGTACTGTTCTTACTGTCATTACTTATGGTGCTAACAGAATTCACAAGTACAATTAAAGCTCCATATTTCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578237.1 lncRNA downstream 180471 14341038 ~ 14353940 (-) True LOC117597393
TU97953 lncRNA downstream 238601 14293937 ~ 14295810 (-) True G82604
XR_004578251.1 lncRNA downstream 582578 13945298 ~ 13951833 (-) False LOC113526223
XR_004578250.1 lncRNA downstream 582579 13943807 ~ 13951832 (-) True LOC113526223
XR_003402750.2 lncRNA downstream 615205 13917103 ~ 13919206 (-) True LOC113526249
TU98125 lncRNA upstream 64554 14601745 ~ 14605015 (-) True G82756
TU98126 lncRNA upstream 137017 14674208 ~ 14729951 (-) True G82757
TU98129 lncRNA upstream 175391 14712582 ~ 14737784 (-) True G82758
TU98131 lncRNA upstream 190666 14727857 ~ 14792165 (-) True G82759
TU98251 lncRNA upstream 382558 14919749 ~ 14920280 (-) True G82849
XM_026912496.2 mRNA downstream 197 14514548 ~ 14534214 (-) True si:ch211-269e2.1
XM_026946101.2 mRNA downstream 102986 14422550 ~ 14431425 (-) True shox
XM_026913169.2 mRNA downstream 252774 14271488 ~ 14281637 (-) False tfdp1a
XM_026912678.2 mRNA upstream 1677 14538868 ~ 14553495 (-) True med14
XM_026912679.2 mRNA upstream 1677 14538868 ~ 14553494 (-) False med14
XM_026913021.2 mRNA upstream 54526 14591717 ~ 14594494 (-) True rpl8
XM_026912841.2 mRNA upstream 81831 14619022 ~ 14759714 (-) False caska
XM_026912840.2 mRNA upstream 81831 14619022 ~ 14759714 (-) False caska
TU96948 other downstream 1806386 12713199 ~ 12728025 (-) False hspbap1
TU96950 other downstream 1817742 12713199 ~ 12716669 (-) False hspbap1
TU95687 other downstream 3498850 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 3563254 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 3925369 10608313 ~ 10609042 (-) False LOC113526229
TU98093 other upstream 15260 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 290595 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 526234 15063425 ~ 15077195 (-) False dcaf6
TU99188 other upstream 1682773 16219964 ~ 16220866 (-) True G83554
TU99754 other upstream 2491116 17028307 ~ 17039843 (-) False mettl8

Expression Profile