RNA id: XM_026912530.2


Basic Information

Item Value
RNA id XM_026912530.2
length 3840
RNA type mRNA
GC content 0.44
exon number 16
gene id gpr155a
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17449880 ~ 17464276 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCGGGCGGTTGATAAAGTCACGCTCACAATCTGAGCAGGACAAACTGAGCTGTGTGGTTGTACAATGTGTGTATCATGTTTCCTTCTGACATGGAAATTTTCTTACTGACATTGGAACAGTCTCACAACGAGGGCGAAACTGGTTAAGACAGGAAGGAAAGTAGCTTTGTGTCTTCTTCGTGTGCTCGCCATGTGGGGCTACAGTGCTGTTTCATGACCGTGAGCTTCAGCACTCCACTGCAGCCAGACTGGCTGAAACCTTTAagctccatccacatctgaaggctTCAGACCTCCAACAGGATGGATGTCCTTCCAAACACCATCTCCATGTCCAACCACATACATGGAGATGAGATCTCATCTGTCCCTCCTCCTGCCATGTCTATCGATAAACTCTTGCCTGCTCTACTTGAGTGTTTTGGGATCATACTGTGTGGCTACATCGCTGGTCGGGCCAATATCATCACCTCCACCCAAGCCAAAGGTCTGGGGAACTTTGTGTCAAAATTTGCCCTACCAGCACTGCTGTTTAAGAACATGGTGCTGCTGGACTTTGGCGATGTCATCTGGCCATTTCTTTGGAGCATCTTAGTGGCCAAACTGGCTGTCTtctttgttgtgtgtgtactgaCGTTACTGGTGGCCAGCAAGGACAGCCGATACTCCAAAGCTGGACTTTTCTCCATATTTGCCACCCAGAGTAATGACTTTGCCCTGGGATACCCTATAGTTGAAGCTCTGTACAGAAACACCCATCCAGAGTACCTGCAGTATATCTACCTGGTGGCACCAGTCTCCCTCATGGTGCTCAATCCTATTGGCTTTGCATTCTGCGAGGTCCAGAAATGGAGACGTGAGCAACGGCAGCAGCAGACTAAGCTGCATGTGATCGGGATGGTCTTTATTCACGTTGTCAAGAATCCCATTGTTTTCATGGTGGTAATTGGGATTGCAGCACACTTTGTCCTTGGCCCAAAGATCCCAGATTTTATGAAGGAGTTTGTGGATGGTTTGGCCAACTCTTTTGGAGGAACAGCTCTGTTTTATCTGGGTCTGACCATGGTGGGGCAGCTGAAGAAACTAACCAGGTCCACTGTGGTGGCTCTCATACTGCTCATCACTGCCAAATTACTGGTGATGCCTCTGATTTGTAGAGGCATGGTGGAGATTTTGGACAGAGGGAATATTAGCTCTCAAAACCAGAGCAGTCTCTCTAACTATGCTTTCCTGTATGGCGCTTTCCCCACTGCACCCAGTGTGGCCATTTACGCCAGTCATTACAACATGGAGCTGCAGGTGATGACATCAGGGATGGTGATCAGCACGTTCCTCTCTGCTCCTATAATGTACGTCTCTGCATGGCTGCTGACTATTCCCTGGATGGATCCCAAACCACTAGAATCAGCACTACAGAACATTAGCTTTAACATCAGCATTGTCAGCCTATTTGCTCTAgtgtgGTGTGTTGCTGTCAGTGTAATGAGTAAGAAGTTCCGCAGACGTCCGCATATGTTTACCATAAATCTGTTTGTGGCACAGCTGGGCGTATGTGTAGGTATGATCGCTTGGGATTTTGTGGTGGTTAAGGATAACTTCATTGGTCAGGTTTTGACCTTTATTCTACTCTATGGCTCGCTCTACAGCACTTACATTTGGCCAGGTCTGatagctctctctctgttcttgcTGAGGAGAGATGAGGAGCTGAAGGTGCAGCCTGGTGTTTTAATGCTAATTGGTTGGGGAGTGCCAGGTGTAGCAATAAGCATCCTGCTCATGGTGGGAGAAAAGATGCCAGACACCATTGACTCTGCCTTCTTTTTCGGCCCAGCACAGGTTGTGTGTACAGTGGTCGTATTGGGTGTAGGTATAGCTGTAGCTGGAATCTCCCTCATGCTGCTCAGCAGAGGCACACACGAATATCAAACTCTTGAGCATAGCTCACTAAATGGCACTGCAGAGGACCTCAGGACTGACAGCAATACACAACCCCAAAGCACTTTTGAGCAGACCACCATAGAGCATGggtgtcagGAATGTGAGTGTAACTTGTCGTCAGTTCAGGCTGTacctaataatatttgtaacaaCAGTGCGCAGGACACACCATCTATACAGCCAGGTCAGTGTGGGAACTGCTGTGGGAACTCCTCTCATTGTTTGCTGGTAGAAGAGGAACAGAAGCAGCAgactgcagacagacaggtggccAGACATGTACTGCTCTGTCTGCTTCTCACTGTCAGTCTCCTGGCTAATATCTCCAGCTACCTCTGGTGGCTCTTCAGTCCAGTTCCAGGCAGACTCTACTTAGAGCTGCAGTTCTTCTGTGCTGTGATCAACTTTGGACAGGGTTTTATATCATTTGGCATTTTTGGTCTTGACAAACATTTAATCATTATACCATTTAAAAAGAGGATAGCACGTCTGATGCGGACTCAGGGACAGGAGGCAGCAGGTTCCTCTAATGTGTCtgaagagatcagactcacctgcAGTCAGTTTCTCAAGTACCACAAAGAACAATGTGTCCAGGACATTGTCCAGACAAAGAGgtgtggggAGCACAGTGTAGCACACACATTTCTTGGCAGTGAAATGGTGCTGTGGCTGCAGACTGTTGGATTGGCCAGTGACCAGGGGGAGGCACTGCTCTACGGCTCCCGCCTGCTGGAAGGCGGAGTCATCCACCACATCACTCATGACTACGATTTCCAAGATGACAACCTGCATTACTGTTTCACAGAGGGCTCTGTGGTCCCTCACTAAAACCGGATGAATATTGTACCCACGAAATAAAAATGTTGGTTTAGGTTTCAGTCTGTTGAATATAACACCTGACTTAACCTTTAGTGTGATTTATGACTTGGTGTGTATTACACTTGGTGTAGACTGACTTGTTTACAGGATGAAAAGGGATGCAATTAACCATGTGCTGCTTTGAAGAGTAAACTATAATATGTACATAACTTAACATATTAAGTTGTACAAGGCTACAGTgcactgaatatttaaaatgcaatgcAAGACTATCAGAGCTTTAAGAAAGCCACTAGACATCCTTTTATATGTATCTTAGTATATAAGGTATAACAACTACTTTGCACTGACAATAGACGTCTTCCATTAAGGCACGCTTTTCAGCTAATATTTCCCTATTACAGGTCTAGCAGATTAACATTCTGTATGGACATTTTTAcagattatgattttttttttttttggactattCAAACACATGTTGTGGTATGTGTACACTAGTGAATTATTTCTGAGGTCTTCCACAATGATCAgtacaaaaaatgtttatacagATACACTCAGGgggaaaaatgttttatttatttataatattcattattatttctgactttttaaaGGTTAGGATTTCAATTATGTTGCCATACATTGTCATTTATCCCATTATTCAGAGTTCAAAACACATTCAACCACATAACTCTAATATACAACTATAATATATAACTCTAATATAACACATTGTATGAGTGTGCCATACTAGTACATATATTGTTAAGTTTTTAGTGATCAGTGATGTTCCTATGAAGGCTGAGGAAGAGGGTCTGTTAATttgttgtgtgttaaaataacCCTCTTAAAAGATCAAACCTAAACATTAGTTGCAGGGATTCGAGCAGCATTTCAGCATGTCTAACGTTAGCGCTATGTAAAACCGCAACACTGTCTGTAAGAAACATGCTTATCTGCTAATAGTATTTTTGgtgctttatttattagagGTACAGTTGTTTTCATGTTTACATTGCATATCCCTAATATTTAATTTGGGTatcaaataaaccattttttcaaagtg

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100003 lncRNA downstream 18449 17407218 ~ 17431431 (-) True LOC117597450
XR_004578290.1 lncRNA downstream 18558 17408749 ~ 17431322 (-) False LOC117597450
XR_004578291.1 lncRNA downstream 18558 17408749 ~ 17431322 (-) False LOC117597450
XR_004578289.1 lncRNA downstream 18558 17408749 ~ 17431322 (-) False LOC117597450
TU100005 lncRNA downstream 57933 17391684 ~ 17391947 (-) True G84227
TU100221 lncRNA upstream 231014 17695290 ~ 17697086 (-) False evx2
TU100224 lncRNA upstream 262377 17726653 ~ 17727997 (-) True G84394
XR_004578231.1 lncRNA upstream 276361 17740637 ~ 17744020 (-) False LOC117597384
TU100243 lncRNA upstream 276363 17740639 ~ 17744025 (-) True LOC117597384
TU100258 lncRNA upstream 369099 17833375 ~ 17833589 (-) True G84411
XM_026913145.2 mRNA downstream 6358 17437158 ~ 17443522 (-) True cir1
XM_026912831.2 mRNA downstream 68708 17372058 ~ 17381172 (-) False sp3a
XM_034304695.1 mRNA downstream 68709 17372058 ~ 17381171 (-) False sp3a
XM_026912829.2 mRNA downstream 68709 17372058 ~ 17381171 (-) True sp3a
XM_026912830.2 mRNA downstream 68710 17372058 ~ 17381170 (-) False sp3a
XM_026913156.2 mRNA upstream 1412 17465688 ~ 17472291 (-) False wipf1a
XM_026913157.1 mRNA upstream 1412 17465688 ~ 17472217 (-) False wipf1a
XM_026913155.1 mRNA upstream 1412 17465688 ~ 17472217 (-) True wipf1a
XM_026947803.2 mRNA upstream 8839 17473115 ~ 17482009 (-) True LOC113547453
XM_026912706.2 mRNA upstream 21772 17486048 ~ 17523051 (-) True chn1
TU99754 other downstream 410037 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1229014 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 2372685 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2612487 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2896421 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 2016844 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2104475 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2762452 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 3671770 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 3671770 21136046 ~ 21144621 (-) True phgdh

Expression Profile