RNA id: XM_026912570.2


Basic Information

Item Value
RNA id XM_026912570.2
length 1639
RNA type mRNA
GC content 0.49
exon number 9
gene id pdzk1
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 12085115 ~ 12090514 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCATGAGATGTGGTTAAATACCTCACCATTTAAGTGAACCTTTGTTCTGTCAAAGTCCATTACACACTTGTGCATGGCTAAATAACACTTGCAAAAAAGATGTAAGTGCTTCCTTTAGGCTGGGACATCAACGGGACGGGAACAGGAGAATAATGGCTGGGCCAAAACCTCGAGTGATTGCACTTTCCAAGCGTGAAGGCCAGAGCTATGGCTTCTACCTGAGGATTGAGGAGGGGGCAGAAGGTCATTTGGTTCGGGCGTTGGAGATGGGTGGTCCTGCTGAACTAGCTGGTCTCAAGGATGGAGATCGCATTATCAGAGTCAATGGAACCTTTGTGGACAACCTGGAACACAGCCAGGTTGCAGATCTGGTTAAGAAAAGTGGATTGACTGTCACATTCCATGTCCTGGGAGAGGAAGCATACCAGCAGGCCAAAAGAAATGGCATAAACCTTGCAGAACCACAGTCCTATTCTGCTCAGAGTCAGCCCACCATGAACGGAGTTCCTGCAGCAGGCCCTAAACTCAAACTCTGCTTTCTGCTGAAGTCCAGCAGTGGCTTTGGTTTCTCGATCAAGTCCTGTAAAGGTCCAGAGGGAATGTTCATGACGGATGTGATTGTGGGAGGGGCGGCTGATAATGCGGGGGTTAAGGCAGGTGATCGTCTGGTGGAGATCAATGGAGAAAATGTAGAAGGCGCTACACATGATCAAACTGTGGAAAAAGTCAAAGCTGcgggaaaaagtgtgatgtttTTACTCGTGGACAAGGACACAGACAAATACTACAAGAATAAATGCATCAGACTGGGAACTGGACTGGCCACAACGAAGCACCTACCAATGAATCCTCGCATAGTTGAAATCACCAAGGGAGCCAGTGGTTATGGCTTCTTCCTTAAGGCAGACCCTAAAACTCCAGGTCATTTCATTGGAGAAATCGACCGTGGGAGTCCTGCAGAAAAAGGGGGACTGAAGGAGATGGACCAGCTGGTggctgtggatggagaggaggttAATCACTGTACCCATGAGCAAGTGGTGGATAAAATACGTGAGCTCGGAAATCGATGCTGCCTCCTGGTGGTTGATGCTGAAACAGACAAGATGTACAAGATGggtggTGTCTCTCCTTTACTTTATTGGGAGGAAATGAGGAGTTCCCTTCCTCAGATGAGCAATCCTGAGCCTGAACATAATGTCACCCCAGTCCCAGCCATGGCTGACGCTCCTGAGGTAATATATAAACCCAAATTGTGCCGCATGGAAAAGGGCGCTGCTGGATACGGCTTCCACCTCAATGGTATCCAAGGAGTGCATGGACAATATATCAAAGAGGTGGTGAAAGGAGGACCAGCAGACAGAGCAGGGCTAGAGGATGAAGACATTGTGGTGGAGGTCAATGGGGTGAACATAGAGGAAAGCACGCATGAGGAGGCTGTGAATCTGATCCGCAGCAGTGGTGACACATTGGTCCTCCTTGTAGCAGGGAAAGCTGCTTATGAGCACCTGAAAGCTAAGGGAGTTGCAATTACCCCCAAGCCGCTGGATACCGAACAAACACCAGTTCAGCCTCGTGAAAGGACACCCTCTGTTTCATCTACATCCTCATCAGAAAGTGAAGATGAGAGGCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96415 lncRNA downstream 33913 12051418 ~ 12051772 (-) True G81222
TU96414 lncRNA downstream 35031 12050367 ~ 12050654 (-) True G81221
TU96413 lncRNA downstream 40210 12041634 ~ 12045475 (-) True G81220
TU96345 lncRNA downstream 228418 11844876 ~ 11857267 (-) True LOC117597344
TU96436 lncRNA upstream 24593 12115107 ~ 12115359 (-) True G81243
XR_003404757.2 lncRNA upstream 117495 12208009 ~ 12210224 (-) True LOC113546902
TU96617 lncRNA upstream 205833 12296347 ~ 12296635 (-) True G81413
TU96731 lncRNA upstream 343853 12434367 ~ 12434572 (-) True G81520
TU96773 lncRNA upstream 392165 12482679 ~ 12507688 (-) False irs2b
XM_026912464.2 mRNA downstream 35984 12015445 ~ 12049701 (-) True st6gal2a
XM_026912597.2 mRNA downstream 90019 11966494 ~ 11995666 (-) False uxs1
XM_034304859.1 mRNA downstream 90019 11966494 ~ 11995666 (-) False uxs1
XM_034304858.1 mRNA downstream 90019 11966494 ~ 11995666 (-) True uxs1
XM_026912621.2 mRNA downstream 190605 11887868 ~ 11895080 (-) True fhl2a
XM_026910761.2 mRNA upstream 392147 12482661 ~ 12496451 (-) True irs2b
XM_026910153.2 mRNA upstream 453265 12543779 ~ 12589550 (-) True col4a1
XM_026912674.2 mRNA upstream 566539 12657053 ~ 12661141 (-) True LOC113525968
XM_034304681.1 mRNA upstream 622551 12713065 ~ 12728037 (-) False hspbap1
XM_026912186.2 mRNA upstream 622551 12713065 ~ 12728037 (-) True hspbap1
TU95687 other downstream 1050124 11018279 ~ 11035561 (-) True G80656
TU95628 other downstream 1114528 10969417 ~ 10971157 (-) True G80600
TU95376 other downstream 1476643 10608313 ~ 10609042 (-) False LOC113526229
TU94731 other downstream 2431230 9653794 ~ 9654455 (-) False si:dkey-83m22.7
TU94755 other downstream 2516565 9568555 ~ 9569120 (-) True G79826
TU96948 other upstream 622685 12713199 ~ 12728025 (-) False hspbap1
TU96950 other upstream 622685 12713199 ~ 12716669 (-) False hspbap1
TU98093 other upstream 2461937 14552451 ~ 14553459 (-) False med14
TU98227 other upstream 2737272 14827786 ~ 14837393 (-) False ndp
TU98290 other upstream 2972911 15063425 ~ 15077195 (-) False dcaf6

Expression Profile