RNA id: XM_034304856.1


Basic Information

Item Value
RNA id XM_034304856.1
length 6071
RNA type mRNA
GC content 0.49
exon number 50
gene id zmp:0000001200
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18174996 ~ 18258225 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCTGTCGGGGCACGGCGCGCGGACATTACGCTTGACTAGCGCGTGAAGCGAGCGGAGGAGATGACACGACGCTGACTTAGTGCGAGAGAATGCGCTGCTGTTGGAGGCGGGAGCGCTGCACAAGCACCAGCTCGAGTGCACTTAGCCGTCAGTGCTCAGGGAGAGTGAGTTTAGGATGAGCTTTCGTGAGTTGGACGCGGAGTGGATTATCGGGGACGTCCTGACTAGAAGCCCGAGTCGACGCGCGCGCTCCAGAATATAAGGGGAGCTGGGAGGTGGGAGGTAAACACGGGCGGATGGTGTGGAGTCTGTTTGCTTCCTTGCGTTAGAAATACACACTTGGGAACGAGTTTGTGAAGGTGTGACGGCTGAAAATGTCTCTGCCGGTACATGCCGAGACGAGGAAATTCACCCGGGGGCTCGGCAAACCGGGAACAGCCGCCGAGCTGCGACAGAGTGTCTCCGAGGCGGTGAGGAGCTCCGTGCTGGTGctaAAGCCACGTTTGATTGAGCCATTGGACTATGAGAGTGTCCTGGTCCAGAGGAAGACTCAGATCCTTAGCGATGTTCTCCGAGACATGCTGCAGTTCCCTCTGGAGGATTTTCAGACCTGCACTCTGCGCCGGCAGATCCGCACTCTGTACCCATCAGTTCCAGACAATGCCCAGAGAGAAGCGCACAGCCTGTTCGTGCAGGAGTGTCTTAAGACCTACAAATCAGACTGGCACGTTGTCAACTACAAGTATGAAGATTATTCTGGTGACTTCCGTCAACTCCCCAACAAAGTGTCAAGACCCGATAAGCTGGCAGTTCATGTGTTTGAGGTTGACGAAGATGTTGATAAAGACGAGgacACAGCTTCCTTGGGCTCTCAGAAGGGTGGTGTTAGTAGGCAAGGCTGGCTTTACAAAGGCAACATGAACAGTGCGATCAGTGTCACTATGAGGTCTTTCAAAAGGAGGTATTTCCACCTCACACAATTAGGAGATGGCTCCTATAACCTGAACTTCTACAAGGATGAAAAGATCTCCAAGGAGCCCAAAGGAACCATTTTCCTAGATTCCTGCATGGGTGTAGTTCAGAATAATAAGGTGCGCAGGTTTGCATTTGAACTGAAGATGCAGGATAAGAGTGCATATCTGTTGGCCGCCGACTCTGAAAGTGAGATGGAGGAGTGGATCAGCACGCTGAACAAAATACTTCACAGCAGCTTTGAGCTCGCCATGCAAGAGAAGAGGAATGGAGACCTACATGATGATGATGAACTGGGGAAGACTGATGGCTCTTCTGGAAGTATGGACAGCTTTCAGAGCGCCAGAGATATCGAGTCTAAGATGAGAAATGAAACTCGGCTAAAGCTCTTCACATTGGATGCAGACACACAGAAATTGGACTTCTCTGGGATCGAGCCAGAAATCAGACCATTCGAGGAGAAGTTTGGAAAGCGTATTCTTGTGAAATGCAACGACCTGTCATTCAACCTGCAGAGCTGTGTGGCAGAGAATGAGGAGGGCCCAACCACCAATGTGGAGCCGTTCTTCGTCACACTGTCCTTGTTTGATGTTCAGAACAGTCGGAAGATCTCGGCAGATTTCCACGTAGACCTAAACCACCCGTCAGTAAGAGCCATGGTTCCAGGCTCTGGTGCTCAGATCATTAATGGAGCTTCAGAAGCAGCACAGCAAACACAGAATGATCTCCCGGAGAGTTTTCTGCAGTATCCACGACAGggagTGTTTTCTGTGATGTGTCCGCACCCAGATATCTTCCTGGTGGCTCGGATTGAGAAAGTTCTTCAGGGAGGAATAACTCACTGTGCTGAGCCATACATGAAAAGTTCTGATTCCACCAAGacGGCACAGAAGGTGCTGAAGAACGCTAAAGTAGCATGTAGCAGGCTCGGCCAATACAGGATGCCTTTTGCTTGGGCAGCCAGGCCTCTGTTTAAGGATGCAAATGGGGCACTGGATAAATCTGCACGTTTCTCTGCAATCTACAGGCAGGACAGTAACAAGCTATCTAATGAGGACATGTTCAAACTCCTGGCAGATTTCAGGAAGCCAGAGAAAATGGCTAAGCTGCCAGTGATCCTGGGGAATCTGGATGTCACTGTCGACAATGTGGCCCCAGATCTCCCAAACTGCATAACGTCCTCATATATCCCAGTGCGTCAGTTTGAGAGCAGTAATTGGAACGGGGTGTTGTTTGAGGTCGAGGAGTTTGTGCCATGTATAGCGAAATGCTCACAACCCTTCACCACTTATAACAATCACCTGTATGTCTACCCACGCCATCTCAAATATGACAGTCAGAAGACCTTTGCTAAGGCTAGAaacattgctgtgtgtgtggagttcaGAGACTCGGATGATGAAGATGCACTTCCTCTAAAGTGTATATATGGTCGTCCAGGTGGATCACTTTTCACTAAGAATGGCATTGCAGCAGTGTTGCATCATCAGCAAAACCCGGAGTTTTATGATGAgTTTAAGATTGAGCTCCCGACTCAGCTGAATGAGAAGCACCACCTTCTGTTCACATTCTACCACATCAGCTGTGACACCAACAGCAAAGCTAGCACTAAGAAGCGGGAACAGGTGGAGACACAGGTGGGATATGCGTGGCTGCCCTTACTGAAGGATGGCAGAGTGATCATGAATGAACAGAGTATTCCTGTAGCTGCAAACCTGCCTGCTGGCTACCTCAGCTGCCAGGAGGGCAACAGCAAGCAGCACACAGGCCCTGAAGTGAAGTGGGTTGATGGAGGAAAGCCACTGTTTAAGGTCTCCACTCACCTGGTGTCCACAGTCTACACACAGGATCAGCATCTGCACAATTTCTTCCACCACTGTGAGAGCACTGTGTCTGCAGCCCAGTCCACAGGAGGCGAGCTGGTCAAATACCTGAAGAGTCTGCATGCAGTGGAAGCTCACGTGATGATAAACTTCCTCCCCACGATTCTGAACCAGCTGTTCTGCGTTCTCACCAGTGCAGCTCTCGAGGACGTTGCTGTCAATGTCACAAGAGTTATGATCCACATAGTGGCTCAGTGCCATGAGGAGGGTTTGGAACATTATCTGCGTTCATATGTCAAGtaTGTATTTATGACAGATGCTAACACAGCCACTGGTAAAACAGTGCACGAGGAGCTGGCCAAAGCCATGACCACCATTCTAAAGCCCTCCACAGACTTCCTAACCAGCAACAAACTGCTCAAGTACTCCTGGTACTTTTTCGAGGCCTTAGTCAAGTCCATGGCACAGTACTTGATAGAAAGCGGTAAAGTTAGGCTGTCCAGGAACCAGCGTTTCTCAGCCTCGTTTCACCACACAGTGGAGACCTTGGTGAATATGCTGATGCCTCACATCACGCAGAAATACAAAGACAACCTGGATGCAACACGCAATGCCAACCACAGCCTGGCTGTCTTCATCAAACGCTGTTTTACCTTCATGGATCGTGGCTTTGTCTTCAAGCAGATCAACAACTATATCAACTGCTTTATGCCTGGAGATGCTAAGACACTGTATGAGTTTAAGTTTGAGTTCCTGAAGGTGGTGTGCAACCATGAGCACTACATCCCTCTTAATCTGCCCATGCCATTCGGGAAAGGGCGAATAATGAGATTTCAAGCAGCTCCCTACTACAGTATGGAGTCTCAGTCTGCTCTAGatcTTCAGTTGGACTACTCTTTAACTGATGACTTCTGTAAGAATCACTTCCTGGTTGGGCTTTTATTAAGGGAGGTGGGTGCAGCTCTGCAGGAGTTTCGTGATATTCGTCAAATAGCCATCCAGGTGCTGAAGAACATGATGATCAAACATACATTTGATGATCGTTACACCTCCAAGAGTCAGCAGGCGAGGTTGGCTACACTGTACCTGCCTCTCTTTGGCCTACTCCAGGAGAACGTCCAGAGACTCAACATTAAAGATACCACGCCCTTGACCAACAGTCTCTCCAGCAGCACTGTACGTGATGAACCAGTCCCTACCAGCTCTTTGATGACACCCCATAAAACAGGGAGTCACATCGAGAGCAGCCTGCATAAGGATGTGTTTGGGGTTATATCTGGAACAGTCACTCCACACGCATCCTCCACTCCGAATATCTCTGTACGTCATGCTGACTCACGCTGCTCCCTCATCAGCACTGACTCAGGAAGTAGCCTACCAGAACGCAGCAATGACAAATCCCACCCTCTTGACAAGcAGTGCAATGTGGCTGCAGCTCTGGGTGGATCCCTCCTGCGCTGTGATAAACTAGAGCAGTTTGAAGTCAAGAGCCTGTTAATGTGTTTCCTGCATGTGCTCAAGAGCATGTCTGAAGATGCCCTCTTTACCTACTGGAATAAAGCTTCATCTGGAGATCTGATGGACTTTTTCACTCTGTTGGAACTGTGTCTCCACCAGTTCAGATACATGGGGAAGAGGTACATTGCCAGGAGCCAGGAAGGGTCTGTAACACATGAGCGCAAGTCTCAGACTCTACCTGTGTCCCGCAGTAGAGCCGGAATGATGCATGCTCGCTTACAGCAGCTCAGCAGCTTGGATAACTCATACACTTACAACCACAcCTACAGTCATTCAGATGCAGATGTGTTAAACCAGTCACTCCTGGAGGCAAATATTGCTACTGAAGTGTGTCTGACAGTTCTGGATGTACTAAGCATCTTCATCATGGGATTTAAGaCCCAGCTGAGCTTAGATCATGGGCACAACCCTCTGATGAAAAAGGTGTTTGCAGTCCATCTGTGTTTTCTTCAAATCAACCAGTCAGAGACAGCCCTCAAACAAGTCTTCACTTTCCTGCGCACCTTTATCTACAAATTCCCTTGTACATTTTTCGAGGGCCGCGCGGATATGTGTGCATCCTTCTGTTATGAGATCCTAAAATGCTGTAACTCCAAACTCAGCTCCATCCGCTCGGATGCTGCCCACCTGCTTTACTTTCTCATGAAGAGCAATTTTGACTACACGGGCAGGAAGTCCTTTGTTCGAACCCATCTGCAGGTGGTGATTGCTGTCAGCCAGCTGATTGCTGATGTTATTGGAATTGGTGGGATGAGGTTTCAGCAGTCTCTGTCCATCATAAACAACTGTGCAAACAGTGACAAGACCATTAAAAACACTGCATTTCCATCTGATGTAAAAGACCTGACAAAGCGAATCCGTACAGTCCTGATGGCCACAGCTCAGATGAAGGAGCATGAGCGAGATCCAGAGATGCTGGTGGACCTGCAGTACAGTCTGGCCAAGTCGTACGCCAGCACTCCTGAACTGCGCAAGACCTGGCTGGACAGCATGGCTCGCATCCACGTCAAGAACGGAGATCTGTCTGAGGCTGCCATGTGTTACGTGCATGTAGCAGCACTGGTAGCCGAATACCTTCAAAGAAAAGGCATGTTTAAACAGGGCTGTTCTGCATTTCGAGTGGTCACGCCCAACATTGACGAGGAGGCGTCTATGATGGAAGATGTGGGCATGCAGGACGTGCACTTCAATGAGGACGTCCTAATGGAGTTGTTAGAGGAGTGTGCTGATGGACTCTGGAAAGCAGAACGATATGAGCTTATCTCTGATATCTACAAACTCATCATACCCATCTATGAGAAACGCAGGGACTTTGAGAAACTGGCTCACCTATACGAGACACTCCACCGTGCGTACAGCAAGGTCACAGAGGTGATGCACACAGGCAAGCGGCTCCTGGGAACCTACTTCAGGGTGGCCTTCTTTGGACAGggaTTCTTTGAGGATGAAGATGGTAAAGAATACATCTACAAAGAGCCCAAATTTACCCCTCTGTCAGAGATTTCTCAGCGACTCCTCAAACTCTACTCAGAGAAGTTCGGAGCGGAGAATGTCAAGATGATCCAGGACTCAGGAAGATTAATCCTAAAGACCTGGATTCCAAGTATGCCTATATCCAGGTGACTCATGTCACTCCCTTCTTGGAGGAGAAGGAGCTGGTGGAGAGGAAGACTGAATTCGAGAGGAGCCACAACATCCGACGCTTTGTATTTGAGATGCCCTTCACTGTCTCGGGCAAGAAGCAGGGTGGTATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100817 lncRNA downstream 42111 18135669 ~ 18137083 (-) True G84883
TU100816 lncRNA downstream 43580 18134836 ~ 18135614 (-) True G84882
TU100814 lncRNA downstream 45505 18133402 ~ 18133689 (-) True G84880
TU100815 lncRNA downstream 47196 18131410 ~ 18131998 (-) True G84881
TU100258 lncRNA downstream 345605 17833375 ~ 17833589 (-) True G84411
TU100942 lncRNA upstream 282129 18540353 ~ 18555865 (-) True G84975
TU101041 lncRNA upstream 409767 18667991 ~ 18668211 (-) True G85069
TU101156 lncRNA upstream 655163 18913387 ~ 18915283 (-) False LOC113526313
TU101194 lncRNA upstream 780003 19038227 ~ 19038432 (-) True G85205
TU101200 lncRNA upstream 793174 19051398 ~ 19053050 (-) True G85211
XM_026912589.2 mRNA downstream 5146 18163180 ~ 18174048 (-) True slc15a1a
XM_026912590.2 mRNA downstream 5146 18163718 ~ 18174048 (-) False slc15a1a
XM_026912870.2 mRNA downstream 17552 18146406 ~ 18161642 (-) True stk24a
XM_026912614.2 mRNA downstream 65722 18088623 ~ 18113472 (-) False LOC113525937
XM_034304397.1 mRNA upstream 3011 18261235 ~ 18313731 (-) True LOC113526154
XM_026912979.2 mRNA upstream 67183 18325407 ~ 18337210 (-) True LOC113526158
XM_034304886.1 mRNA upstream 83192 18341416 ~ 18370653 (-) False mbnl2
XM_026912976.2 mRNA upstream 83192 18341416 ~ 18370458 (-) False mbnl2
XM_026912974.2 mRNA upstream 83192 18341416 ~ 18370455 (-) True mbnl2
TU99754 other downstream 1139351 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1958328 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3101999 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3341801 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3625735 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1222896 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1310527 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 1968504 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 2877822 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 2877822 21136046 ~ 21144621 (-) True phgdh

Expression Profile