RNA id: XM_026912590.2


Basic Information

Item Value
RNA id XM_026912590.2
length 2220
RNA type mRNA
GC content 0.48
exon number 23
gene id slc15a1a
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 18163180 ~ 18174048 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTACACTGTGGGTTCTGTAGACACACCAGTCTTTTCATCCACTGTCACTCAGCAGGTTACACGCGCAACCATGACGGACAAAGAGAAGAATGATGATAAGAAACCAAAGAAGagtgtggAATGCTGTGGTTATCCAGTCAGTATATTTTTCATCGTTGTCAACGAGTTTTGTGAGAGATTCTCCTACTATGGAATGCGTGCGGTGCTGGTGCTGTACTTCAGGTACTTCCTGCGTTGGGATGACGACCTTGCCACCTCCATCTATCACGCTTTTGTGGCCCTGTGCTACCTGACTCCCATACTAGGTGCCATCGTGGCTGACTCATGGCTTGGAAAGTTTAAAACCATCATCTACCTGTCCATTGTGTATGCCATTGGCCAGGTCATCATGGCAGTCAGTGCTATTCATGACATCACCGACACAAACAGAGACGGTACACCAGACAATATGGCAGTGCATGTCGCCTTGGCTATGATAGGGCTGATCCTCATTGCTCTTGGTACAGGTGGCATCAAACCCTGTGTGTCTGCATTTGGAGGAGATCAGTTTGAGGACCACCAGGCGAGGCAGCGAAGTACGTTCTTCTCTGTGTTCTATCTGTGTATTAATGCTGGCAGTCTCCTCTCCACCCTCATCACCCCCATACTCCGAGGTCAGGAGTGTGGTATTCACAGTACACAGAAATGCTACCCGCTAGCTTTTGGTGTTCCTGCAGCCCTCATGGTGGTCTCTCTGGTTGTGTTCATTGCTGGCAGTGGTATGTATGTTAAAGCTGCACCCAAGGGCAACATTATGCTGGATGTGTCTAAATGCATTGGGTTTGCTATTAAGAACCGTTTCAGACACAGGAGCAGTAAATACCCAAAGAGAGAGCACTGGCTGGACTGGGCTGATGAGAAATACGATAAACTCCTCATTGCTCAAATTAAGATGGTGCTCAAAGTGCTGTTCCTCTACATCCCTCTCCCAATGTTCTGGACCCTATTTGACCAAAAGGGCTCCCGGTGGACCCTCCAAGCCACCACCATGGATGGGACCTTTGGAACACTGGTTCTGCAGCCAGATCAGATGCAGACAGTGAACCCCATTTTGATTCTCACCCTGGTGCCTATCATGGACCGAGTTGTGTATCCTCTCATCAGAAAGTGTGGCTTCAACTTCACCCCTTTGAAGAGAATGACTGTTGGGATGTTTTTGGCTGCTATGGCTTTTGTGTCTGCAGCTCTGGTCCAGATTCAGATCGATAAAACACTGCCAGTTTTCCCATCCTCTACACAAAGTCAGCTGAAGGTAGTGAACATGGGAAGTGCTCAGCTCCAAATCAACATCCCTCCCAACACACCTGTTCTGCTCGGATCCTTGcagGCCAGTGAGGACTACATGACATTTGACACTCCAGATATTACAGTTTCTTTGAACACAAATCCTGTGATCAATAAAACCTTCACCCTGAGTTTGGGACAGCGCCAGACCCTCATCATTCCTTCTGATCCTAATGCCATGTATCTGACAAAAGATTTAACCTCCAAACCAGAGCAAGGCAACAATGCAGTCAGATTTGTAAATGGTATGACTACAGCACTTAATGTTTCAAATGTTGCACTCATCAACCCATCAGATGTTTCAAACAACACACTGGTTCCACAGGGGTCTCGGACGTTCACCATCACTGACGGTGGGCAATCTTGTCAGTTCTCGGCACAGTTTGGGTTTGGAGGAGCTTACACCTTCCTTATCCCCAGCACGCTGAGCTGGactgaaaattgtggagGCTCTATAGTGAGAGTGGAAGATATTCAGCCCAATACTGTGCACATGGCGCTTCAGATCCCTCAGTATTTCCTCATCACTGCAGGAGAAGTGGTGTTCTCCGTCACTGGCCTGGAATTCTCGTACTCACCAGGCCCCCAGCAACATGAAGGCAGTGCTGCAGGCCGGCTGGCTCCTCACTGTGGCTGTGGGAAACTTCATTGTGCTGATTGTGGCAGAGCTGGCAAAGCTACCTGACAAGTGGGCGGAGTATGTGCTGTTTGCTTCTCTGTTAGTGGCAGTGTGTATAATCTTTTCAATAATGGCTTATTTCTACACCTACATCGACCCTGCTGAGATTGAAGCCAAGTTCAAGGAAAACAAAGAGCTGGAACCAGATGagaaagaagcaaaagaaaGTAAAGCTATAGAGATGGAAACACATAAGACATTGCAAAACCAAGACG

Function

GO:

id name namespace
GO:0006857 oligopeptide transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100817 lncRNA downstream 26635 18135669 ~ 18137083 (-) True G84883
TU100816 lncRNA downstream 28104 18134836 ~ 18135614 (-) True G84882
TU100814 lncRNA downstream 30029 18133402 ~ 18133689 (-) True G84880
TU100815 lncRNA downstream 31720 18131410 ~ 18131998 (-) True G84881
TU100258 lncRNA downstream 330129 17833375 ~ 17833589 (-) True G84411
TU100942 lncRNA upstream 366305 18540353 ~ 18555865 (-) True G84975
TU101041 lncRNA upstream 493943 18667991 ~ 18668211 (-) True G85069
TU101156 lncRNA upstream 739339 18913387 ~ 18915283 (-) False LOC113526313
TU101194 lncRNA upstream 864179 19038227 ~ 19038432 (-) True G85205
TU101200 lncRNA upstream 877350 19051398 ~ 19053050 (-) True G85211
XM_026912870.2 mRNA downstream 2076 18146406 ~ 18161642 (-) True stk24a
XM_034304710.1 mRNA downstream 49313 18088623 ~ 18114405 (-) False LOC113525937
XM_026912585.2 mRNA upstream 948 18174996 ~ 18258223 (-) True zmp:0000001200
XM_026912587.2 mRNA upstream 948 18174996 ~ 18258222 (-) False zmp:0000001200
XM_026912588.2 mRNA upstream 948 18174996 ~ 18258222 (-) False zmp:0000001200
XM_026912586.2 mRNA upstream 948 18174996 ~ 18258222 (-) False zmp:0000001200
XM_034304855.1 mRNA upstream 5146 18179194 ~ 18258225 (-) False zmp:0000001200
TU99754 other downstream 1123875 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 1942852 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 3086523 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 3326325 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 3610259 14552451 ~ 14553459 (-) False med14
TU101475 other upstream 1307072 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 1394703 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 2052680 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 2961998 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 2961998 21136046 ~ 21144621 (-) True phgdh

Expression Profile